Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000682`

染色体: Chr03 坐标: 7625512-7626741 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000682`
名称	SmilChr03G000682
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	7625512 - 7626741 / `-`

ID 对照

NCBI Gene ID	`LOC131018243`
GeneID	`131018243`
locus_tag	`-`
NCBI Name	`LOC131018243`
原始查询	`LOC131018243`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=30.9; qcov=1.04; evalue=1.68e-28; confidence=low
Rice	`Os09g0448100` (OsFbox489) - identity=34.5; qcov=0.592; evalue=7.4e-15; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131018243

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802950.1`
2	Cytoplasm	细胞质	0.40000	`XP_057802950.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802950.1`
4	Chromosome	染色体	0.00000	`XP_057802950.1`
5	Centromere	着丝粒	0.00000	`XP_057802950.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:7625623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B52,B72,B73,C86
`Chr3:7625664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,C12,C72
`Chr3:7625686`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C39
`Chr3:7625686`	`C`	`CA`	1bp_insertion	CDS_variant	1	C39
`Chr3:7625764`	`C`	`T`	EMS_canonical_SNV	stop_gained	6	A18,B52,B72,B73,C72,C86
`Chr3:7625778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B52,B72,B73,C72,C86
`Chr3:7625809`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,B46
`Chr3:7625963`	`T`	`TCA`	2bp_insertion	frameshift_variant	68	A20,A3,A8,A9,B100,B11,B113,B117,B118,B12,B122,B123,B128,B13,B131,B137,B138,B2,B21,B25,B32,B33,B35,B36,B40,B44,B45,B47,B52,B55,B57,B59,B6,B67,B74,B8,B90,B92,C17,C25,C26,C27,C28,C30,C32,C35,C37,C38,C4,C42,C44,C45,C46,C49,C5,C51,C54,C60,C68,C7,C71,C75,C79,C8,C82,D3,D8,D9
`Chr3:7625979`	`G`	`GAA`	2bp_insertion	frameshift_variant	6	A18,B52,B72,B73,C72,C86
`Chr3:7625981`	`GGC`	`G`	2bp_deletion	frameshift_variant	7	A18,B29,B52,B72,B73,C72,C86
`Chr3:7625985`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	A9,B11
`Chr3:7625985`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A9,B11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802950.1

289 aa

144

289

F-box-like

F-box

FBA_3

FBA_1

PF12937 F-box-like 11-46 aa PF00646 F-box 11-50 aa PF08268 FBA_3 68-270 aa PF07734 FBA_1 100-275 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802950.1`	Pfam	`PF12937`	F-box-like	Domain	11	46	9.3e-09	35.6	F-box-like
`XP_057802950.1`	Pfam	`PF00646`	F-box	Domain	11	50	7.1e-13	48.6	F-box domain
`XP_057802950.1`	Pfam	`PF08268`	FBA_3	Repeat	68	270	1e-13	51.7	F-box associated beta propeller domain
`XP_057802950.1`	Pfam	`PF07734`	FBA_1	Repeat	100	275	5e-20	72.5	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946967.1
TACATGTATCAAATTAAAACTTTTGTCACTATCTTTAATTTGATAGGTACATTAAATGTTTTATCATTAATAAAAACAGAGATTAAAAGAGAAAAAGAAAATTCTTCTATTTAGGAAAAAATTTCATGTTCGAGTTCAAAATTTCATATCCAGAAAGAATTGTTATTCAAATATAAAACTAAGTAAAAATAATTATAAAAGTGATTAAATAAAGGATATTTCAAATAAAAAAAAATAAAAAAAATCACGCAAATTTCATG...

CDS

1 records

下载 CDS FASTA

LOC131018243
ATGGAGACCAAAAACAATCTCCGATCTCACCATCTCCCCCAAGAAATCACCGAAGAAATACTGTCAAGACTCCCGGTGAAATCACTCCTCAGATTCAGGTGCGTTTCGAAACCATGGCACTCTTTAATCGACAGCAAACGATTCATCAAAACCCATCTTCAAAATTCGTCGAGAAACCCTAGTTTAGCCCGCCACAAGGTTTTGTTTTTCAGTGGAGCAAAACTGTGGCAACGATCTGTGTACGGTAGCTCAGATACTAA...

Protein

1 records

下载 Protein FASTA

XP_057802950.1
METKNNLRSHHLPQEITEEILSRLPVKSLLRFRCVSKPWHSLIDSKRFIKTHLQNSSRNPSLARHKVLFFSGAKLWQRSVYGSSDTKSLELEFRGRFNSIVGCCNGLVCLLLNEQFVLWNPSARISKKLPHPQPPHVGGETGYRCYTGYGFGWDESSDDHKVFATGVRNMCMIYSLKSDSWKEVNGDLWKSCANHMGEFASGNLHWESRNEGEMVSFDLKREVFEVVELPEPCIGVIGERLAVYERCRSLRCVDIWMMKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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