当前解析结果
SmilChr03G000813| 统一新 Gene ID | SmilChr03G000813 |
|---|---|
| 名称 | SmilChr03G000813 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9305710 - 9308869 / + |
| NCBI Gene ID | LOC131018276 |
|---|---|
| GeneID | 131018276 |
| locus_tag | - |
| NCBI Name | LOC131018276 |
| 原始查询 | LOC131018276 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=33.5; qcov=0.834; evalue=1.13e-95; confidence=low |
| Rice | Os11g0681300- identity=27.5; qcov=0.985; evalue=8.65e-75; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018276 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802983.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057802983.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057802983.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057802983.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057802983.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9306308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,C77 |
Chr3:9306335 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B115,B136,B55 |
Chr3:9306358 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:9306375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B61 |
Chr3:9306394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,B61 |
Chr3:9306405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B61 |
Chr3:9306417 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:9306418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,C77 |
Chr3:9306530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B61 |
Chr3:9306533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B36,B6,B77,C83 |
Chr3:9306569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,B36,C86 |
Chr3:9306707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B126,B13,C2,C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802983.1PF03101
FAR1 43-136 aa
PF21056
ZSWIM1-3_RNaseH-like 227-337 aa
PF10551
MULE 257-349 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802983.1 |
Pfam | PF03101 |
FAR1 | Domain | 43 | 136 | 5.7e-17 | 62.9 | FAR1 DNA-binding domain |
XP_057802983.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 227 | 337 | 3.5e-10 | 40.6 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057802983.1 |
Pfam | PF10551 |
MULE | Domain | 257 | 349 | 1.6e-27 | 96.4 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。