当前解析结果
SmilChr03G000844| 统一新 Gene ID | SmilChr03G000844 |
|---|---|
| 名称 | SmilChr03G000844 |
| 描述 | putative disease resistance protein RGA3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9631854 - 9632618 / - |
| NCBI Gene ID | LOC131018284 |
|---|---|
| GeneID | 131018284 |
| locus_tag | - |
| NCBI Name | LOC131018284 |
| 原始查询 | LOC131018284 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA3 |
| 产物 | putative disease resistance protein RGA3 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=29.5; qcov=1.17; evalue=1.37e-16; confidence=low |
| Rice | Os01g0547000- identity=29.8; qcov=1.08; evalue=4.46e-22; confidence=low |
| GO | GO:0005515 (protein binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018284 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057802992.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057802992.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802992.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802992.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802992.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9631854 |
C |
CTA |
2bp_insertion | frameshift_variant | 16 | A4,A8,B11,B24,B26,B48,B64,B73,C24,C26,C27,C35,C42,C80,C82,D7 |
Chr3:9631893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr3:9631898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C27,C71,C82,D7 |
Chr3:9631907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr3:9631970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,A9,B111,B59,C20 |
Chr3:9632044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr3:9632073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr3:9632141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B131,B21,D1 |
Chr3:9632161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B78,C5,C75 |
Chr3:9632183 |
TC |
T |
1bp_deletion | frameshift_variant | 4 | B111,B78,C5,C75 |
Chr3:9632183 |
TC |
T |
1bp_deletion | CDS_variant | 4 | B111,B78,C5,C75 |
Chr3:9632293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。