当前解析结果
SmilChr03G001035| 统一新 Gene ID | SmilChr03G001035 |
|---|---|
| 名称 | SmilChr03G001035 |
| 描述 | uncharacterized SmilChr03G001035 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12050264 - 12053965 / - |
| NCBI Gene ID | LOC131018330 |
|---|---|
| GeneID | 131018330 |
| locus_tag | - |
| NCBI Name | LOC131018330 |
| 原始查询 | LOC131018330 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=24.7; qcov=0.373; evalue=5.3e-28; confidence=weak |
| Rice | Os06g0484800- identity=31.9; qcov=0.484; evalue=1.45e-83; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018330 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803038.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057803038.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057803038.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803038.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803038.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12050299 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A22,C28,C32,C68 |
Chr3:12050304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,B55 |
Chr3:12050323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B43,B53,C44,C7,C71 |
Chr3:12050328 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B44,C46 |
Chr3:12050328 |
G |
GT |
1bp_insertion | CDS_variant | 2 | B44,C46 |
Chr3:12050331 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B44 |
Chr3:12050331 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B44 |
Chr3:12050399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B83,C15,C52,C6,C84 |
Chr3:12050409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B83,C15,C6,C84 |
Chr3:12050415 |
TG |
* |
1bp_deletion | CDS_variant | 3 | B135,B46,C38 |
Chr3:12050426 |
A |
AAG |
2bp_insertion | frameshift_variant | 78 | A14,A16,A2,A21,A3,A4,A5,A9,B101,B106,B107,B11,B111,B122,B124,B128,B14,B20,B22,B24,B26,B27,B28,B30,B32,B38,B39,B40,B42,B43,B55,B57,B6,B62,B64,B66,B7,B70,B73,B83,B85,B87,B88,B89,B93,B99,C11,C13,C16,C25,C30,C31,C33,C37,C46,C5,C50,C51,C52,C57,C58,C60,C61,C63,C67,C69,C72,C73,C76,C77,C78,C80,C83,C86,C87,D1,D11,D5 |
Chr3:12050430 |
AG |
A |
1bp_deletion | frameshift_variant | 70 | A14,A16,A2,A21,A3,A4,A5,A9,B101,B106,B107,B11,B122,B124,B128,B133,B14,B20,B22,B24,B26,B27,B28,B30,B32,B38,B39,B40,B55,B57,B6,B62,B64,B66,B70,B73,B83,B85,B87,B88,B89,B99,C11,C13,C16,C25,C30,C31,C33,C37,C46,C5,C50,C51,C52,C57,C60,C61,C63,C67,C69,C72,C73,C76,C77,C83,C87,D1,D11,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803038.1PF00078
RVT_1 247-508 aa
PF13966
zf-RVT 746-823 aa
PF13456
RVT_3 979-1070 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803038.1 |
Pfam | PF00078 |
RVT_1 | Domain | 247 | 508 | 9.6e-31 | 107.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803038.1 |
Pfam | PF13966 |
zf-RVT | Domain | 746 | 823 | 8e-16 | 59.2 | zinc-binding in reverse transcriptase |
XP_057803038.1 |
Pfam | PF13456 |
RVT_3 | Domain | 979 | 1070 | 5.8e-13 | 49.6 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。