Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001097`

染色体: Chr03 坐标: 12650605-12651730 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001097`
名称	SmilChr03G001097
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	12650605 - 12651730 / `+`

ID 对照

NCBI Gene ID	`LOC131018349`
GeneID	`131018349`
locus_tag	`-`
NCBI Name	`LOC131018349`
原始查询	`LOC131018349`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=27; qcov=1.04; evalue=2.84e-25; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=24.1; qcov=0.977; evalue=6.78e-09; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131018349

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803060.1`
2	Cytoplasm	细胞质	1.00000	`XP_057803060.1`
3	Cytosol	细胞质基质	0.20000	`XP_057803060.1`
4	Chromosome	染色体	0.00000	`XP_057803060.1`
5	Centromere	着丝粒	0.00000	`XP_057803060.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:12650732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:12650774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B114,B70,C64
`Chr3:12650810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B6,C25
`Chr3:12650822`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr3:12650823`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B31,B33,B69
`Chr3:12650841`	`T`	`TA`	1bp_insertion	frameshift_variant	71	A1,A15,A18,A19,A6,B103,B104,B105,B111,B113,B12,B128,B129,B131,B138,B14,B18,B2,B27,B29,B30,B36,B38,B39,B51,B55,B56,B58,B59,B6,B65,B74,B76,B80,B81,B83,B84,B85,B89,B91,B94,B98,B99,C12,C14,C17,C20,C23,C25,C26,C30,C37,C38,C43,C50,C56,C58,C59,C62,C64,C66,C7,C70,C71,C75,C80,C81,C84,D10,D6,D9
`Chr3:12650857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B109,B37,B82,C77
`Chr3:12650869`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:12650891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B130,B73,C79
`Chr3:12650937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,C45,D5
`Chr3:12650946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:12651017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B73,C8,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803060.1

349 aa

174

349

F-box

FBA_3

Beta-prop_KIB1-4

FBA_1

PF00646 F-box 15-46 aa PF08268 FBA_3 103-285 aa PF03478 Beta-prop_KIB1-4 105-289 aa PF07734 FBA_1 131-296 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803060.1`	Pfam	`PF00646`	F-box	Domain	15	46	5.7e-09	36.2	F-box domain
`XP_057803060.1`	Pfam	`PF08268`	FBA_3	Repeat	103	285	5.2e-16	59.3	F-box associated beta propeller domain
`XP_057803060.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	105	289	1.7e-08	35.0	KIB1-4 beta-propeller
`XP_057803060.1`	Pfam	`PF07734`	FBA_1	Repeat	131	296	9.1e-17	61.7	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947077.1
AGAAGCAAATTTATTATGGTATTGGAGAAGATGAAGAATGAGAAGAAAGTTGAACAATTTCTTTTAAGATTTTGATATGGAGATCGGAAAATACTGTCTTCATCAAGAAGTCATCGAGGAAGAAATACTGTCAAGATTGCCGGTGAAATCACTCTTGAGATTCAGGTGCGTTTCAAAAACATGGCTGTCTTTAATAGGCAGCAAACGCTTCATCAAAGCCCATCATCAAAATTCAATAAAAAATCCATGTTTCCCCCATC...

CDS

1 records

下载 CDS FASTA

LOC131018349
ATGGAGATCGGAAAATACTGTCTTCATCAAGAAGTCATCGAGGAAGAAATACTGTCAAGATTGCCGGTGAAATCACTCTTGAGATTCAGGTGCGTTTCAAAAACATGGCTGTCTTTAATAGGCAGCAAACGCTTCATCAAAGCCCATCATCAAAATTCAATAAAAAATCCATGTTTCCCCCATCAAAGGCTCATTACACTGAAGAATACGCGTGATAGGCCTGAGGAATGTTCTCTGCAGTCATTGCTGAGTGAACGACC...

Protein

1 records

下载 Protein FASTA

XP_057803060.1
MEIGKYCLHQEVIEEEILSRLPVKSLLRFRCVSKTWLSLIGSKRFIKAHHQNSIKNPCFPHQRLITLKNTRDRPEECSLQSLLSERPISRDSTDDLLMTTLLPFRIWGCYNGLFCVLEKSSKLPFVVEEKPRKIYLWNPSTRSSKKLPEISGPGFAKNYGFGWVESSDEYKVFVSVVDRNSKVGEVYSSKTKSWKTIELRADLVECCGDGVFAGGKLYWKRNGYEEYIIFLDLKSEEFGRIEIPFQQGWRSRSCLVGVVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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