Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001105`

染色体: Chr03 坐标: 12723823-12724932 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001105`
名称	SmilChr03G001105
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	12723823 - 12724932 / `+`

ID 对照

NCBI Gene ID	`LOC131018352`
GeneID	`131018352`
locus_tag	`-`
NCBI Name	`LOC131018352`
原始查询	`LOC131018352`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=27.8; qcov=1.14; evalue=1.94e-24; confidence=low
Rice	`Os04g0194000` (OsFbox184) - identity=24.6; qcov=0.787; evalue=1.48e-09; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131018352

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803064.1`
2	Cytoplasm	细胞质	1.00000	`XP_057803064.1`
3	Cytosol	细胞质基质	0.20000	`XP_057803064.1`
4	Chromosome	染色体	0.00000	`XP_057803064.1`
5	Centromere	着丝粒	0.00000	`XP_057803064.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:12723875`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,B47,B56
`Chr3:12723886`	`C`	`CAT`	2bp_insertion	frameshift_variant	3	B124,B3,C56
`Chr3:12723886`	`C`	`CAT`	2bp_insertion	CDS_variant	3	B124,B3,C56
`Chr3:12723887`	`CCG`	`C`	2bp_deletion	frameshift_variant	3	B124,B3,C56
`Chr3:12723887`	`CCG`	`C`	2bp_deletion	CDS_variant	3	B124,B3,C56
`Chr3:12723903`	`AG`	`A`	1bp_deletion	frameshift_variant	85	A11,A18,A6,A9,B1,B103,B108,B110,B113,B117,B119,B126,B13,B132,B133,B137,B14,B140,B16,B19,B2,B20,B27,B28,B32,B33,B35,B47,B54,B55,B56,B57,B64,B65,B66,B68,B69,B7,B71,B73,B74,B76,B77,B79,B8,B81,B84,B91,B95,B99,C1,C11,C15,C16,C19,C20,C22,C24,C26,C27,C29,C31,C32,C33,C34,C36,C38,C40,C43,C44,C45,C5,C54,C55,C59,C60,C68,C72,C77,C79,C8,C84,C86,D10,D7
`Chr3:12723927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,B136,B3,B47
`Chr3:12723945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B65,C35,C5
`Chr3:12723951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr3:12723956`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr3:12723957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,B65,C62,D10
`Chr3:12723965`	`G`	`GGC`	2bp_insertion	frameshift_variant	1	B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803064.1

361 aa

180

361

F-box

FBA_1

FBA_3

Beta-prop_KIB1-4

PF00646 F-box 11-50 aa PF07734 FBA_1 108-303 aa PF08268 FBA_3 109-294 aa PF03478 Beta-prop_KIB1-4 110-298 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803064.1`	Pfam	`PF00646`	F-box	Domain	11	50	8.9e-09	35.6	F-box domain
`XP_057803064.1`	Pfam	`PF07734`	FBA_1	Repeat	108	303	7.2e-21	75.2	F-box associated beta propeller domain
`XP_057803064.1`	Pfam	`PF08268`	FBA_3	Repeat	109	294	1.1e-12	48.4	F-box associated beta propeller domain
`XP_057803064.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	110	298	1.8e-11	44.8	KIB1-4 beta-propeller

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947081.1
GAAACATATACTGAAGCTTTGGCTATGGAGATCGCAAAAAGTAGTCGAAAATCTCTCCATCTTCCCGGAGAAATCATCGAAGAAATACAGTCAAGATTGCCGGTGAAATCACTCTTGAGATTCAGGTGCGTCTCGAAATTATGGCTGTCATTAATTGGCAGCAAACGCTTCATCAAAACCCAGTATCAAAATTCAATAAAAAACCCATTTTTCCCCCATCAAAGGGTCATTATACATAAGGATCTTTCTGCTAATCATGT...

CDS

1 records

下载 CDS FASTA

LOC131018352
ATGGAGATCGCAAAAAGTAGTCGAAAATCTCTCCATCTTCCCGGAGAAATCATCGAAGAAATACAGTCAAGATTGCCGGTGAAATCACTCTTGAGATTCAGGTGCGTCTCGAAATTATGGCTGTCATTAATTGGCAGCAAACGCTTCATCAAAACCCAGTATCAAAATTCAATAAAAAACCCATTTTTCCCCCATCAAAGGGTCATTATACATAAGGATCTTTCTGCTAATCATGTGCAATGTTCTCTGCTGTCGGTTTT...

Protein

1 records

下载 Protein FASTA

XP_057803064.1
MEIAKSSRKSLHLPGEIIEEIQSRLPVKSLLRFRCVSKLWLSLIGSKRFIKTQYQNSIKNPFFPHQRVIIHKDLSANHVQCSLLSVLSELTNTIPLSPLADPINTTLSMGYEIVGSCNGLLCLRVRDEQSRIHLWNPSTRISKKLPEISNRGYVMDLGFCWVESSNEYKLFVGLRNFDYYQQEIEWVCKVYSSKTKSWKTSEHCADLVLCCLPGVFAGGKLYWRYYGYKEIDIIFLDLKSEVIGRIELPFDHEFCRKQHW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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