当前解析结果
SmilChr03G001154| 统一新 Gene ID | SmilChr03G001154 |
|---|---|
| 名称 | SmilChr03G001154 |
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 13316217 - 13319534 / - |
| NCBI Gene ID | LOC131018377 |
|---|---|
| GeneID | 131018377 |
| locus_tag | - |
| NCBI Name | LOC131018377 |
| 原始查询 | LOC131018377 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 产物 | putative late blight resistance protein homolog R1B-17 |
| Arabidopsis | AT1G58602 (AT1G58602)LRR and NB-ARC domains-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842220] identity=25.8; qcov=1.04; evalue=1.67e-65; confidence=low |
| Rice | Os07g0186500- identity=26.8; qcov=0.829; evalue=5.53e-73; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018377 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803088.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803088.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803088.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803088.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803088.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:13316227 |
TC |
T |
1bp_deletion | frameshift_variant | 8 | A1,B134,B137,B19,B55,C31,C50,C82 |
Chr3:13316294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr3:13316298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B115,B46,B49,C85 |
Chr3:13316320 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B115,B46,B49,C85 |
Chr3:13316343 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | B109 |
Chr3:13316343 |
A |
AC |
1bp_insertion | CDS_variant | 1 | B109 |
Chr3:13316453 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A1,B134,B137,B19,B55,C31,C43,C82 |
Chr3:13316461 |
AC |
* |
1bp_deletion | CDS_variant | 1 | B85 |
Chr3:13316482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr3:13316496 |
C |
CCG |
2bp_insertion | frameshift_variant | 1 | B57 |
Chr3:13316496 |
C |
CCG |
2bp_insertion | CDS_variant | 1 | B57 |
Chr3:13316503 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | B115,B49,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803088.1PF00931
NB-ARC 163-330 aa
PF23559
WHD_DRP 417-488 aa
PF23598
LRR_14 544-870 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803088.1 |
Pfam | PF00931 |
NB-ARC | Domain | 163 | 330 | 2.5e-42 | 145.1 | NB-ARC domain |
XP_057803088.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 417 | 488 | 2.4e-15 | 57.0 | Disease resistance protein Winged helix domain |
XP_057803088.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 544 | 870 | 4.1e-14 | 52.8 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。