当前解析结果
SmilChr03G001236| 统一新 Gene ID | SmilChr03G001236 |
|---|---|
| 名称 | SmilChr03G001236 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 14275833 - 14278119 / + |
| NCBI Gene ID | LOC131018416 |
|---|---|
| GeneID | 131018416 |
| locus_tag | - |
| NCBI Name | LOC131018416 |
| 原始查询 | LOC131018416 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT1G50180 (AT1G50180)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=37.7; qcov=0.928; evalue=6.73e-91; confidence=medium |
| Rice | Os11g0633500- identity=29.4; qcov=0.951; evalue=5.46e-60; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018416 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803123.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803123.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803123.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803123.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803123.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:14275925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr3:14275927 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr3:14275934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B129,B30 |
Chr3:14275937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B129,B30 |
Chr3:14275958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B129 |
Chr3:14275969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B129,C4 |
Chr3:14275984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr3:14275997 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr3:14276069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B111,C24,C78 |
Chr3:14276085 |
A |
AC |
1bp_insertion | frameshift_variant | 5 | B117,B118,B127,B36,B98 |
Chr3:14276085 |
A |
AC |
1bp_insertion | CDS_variant | 5 | B117,B118,B127,B36,B98 |
Chr3:14276091 |
AGG |
A |
2bp_deletion | frameshift_variant | 2 | B30,C21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803123.1PF18052
Rx_N 5-87 aa
PF00931
NB-ARC 172-335 aa
PF13401
AAA_22 187-275 aa
PF23559
WHD_DRP 422-499 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803123.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 1.3e-18 | 67.6 | Rx N-terminal domain |
XP_057803123.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 335 | 1.8e-36 | 126.1 | NB-ARC domain |
XP_057803123.1 |
Pfam | PF13401 |
AAA_22 | Domain | 187 | 275 | 3.8e-08 | 34.4 | AAA domain |
XP_057803123.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 422 | 499 | 3.7e-11 | 43.6 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。