当前解析结果
SmilChr03G001274| 统一新 Gene ID | SmilChr03G001274 |
|---|---|
| 名称 | SmilChr03G001274 |
| 描述 | uncharacterized SmilChr03G001274 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 14869416 - 14874252 / - |
| NCBI Gene ID | LOC131018429 |
|---|---|
| GeneID | 131018429 |
| locus_tag | - |
| NCBI Name | LOC131018429 |
| 原始查询 | LOC131018429 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=31.7; qcov=0.274; evalue=6.49e-50; confidence=weak |
| Rice | Os06g0484800- identity=29.3; qcov=0.529; evalue=3.05e-99; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018429 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803134.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057803134.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057803134.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803134.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803134.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:14869451 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B1,D11 |
Chr3:14869451 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B1,D11 |
Chr3:14869460 |
C |
CA |
1bp_insertion | frameshift_variant | 8 | B30,B88,B89,C16,C28,C41,C71,C81 |
Chr3:14869483 |
TC |
T |
1bp_deletion | frameshift_variant | 78 | A13,A2,A6,A7,A8,B10,B100,B105,B106,B110,B114,B115,B119,B123,B125,B126,B127,B128,B13,B131,B132,B137,B140,B19,B2,B22,B23,B24,B27,B29,B3,B31,B33,B37,B38,B39,B4,B43,B45,B46,B47,B63,B81,B95,C1,C10,C11,C19,C2,C21,C22,C24,C30,C33,C35,C39,C41,C45,C54,C56,C6,C63,C65,C69,C72,C73,C76,C77,C78,C79,C8,C80,C82,D1,D10,D11,D6,D7 |
Chr3:14869511 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | A18,A7,B110,B50,B52,B54,B77,B80,B86,B9,B97,B99,C14,C32,C37,C47,C68 |
Chr3:14869683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,A3,B124,B52,B77 |
Chr3:14869685 |
CA |
C |
1bp_deletion | frameshift_variant | 3 | B140,B44,B55 |
Chr3:14869685 |
CA |
C |
1bp_deletion | CDS_variant | 3 | B140,B44,B55 |
Chr3:14869692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,B55 |
Chr3:14869706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B48,B55 |
Chr3:14869711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,C16,C35 |
Chr3:14869717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,B86,C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803134.1PF03372
Exo_endo_phos 5-220 aa
PF00078
RVT_1 499-760 aa
PF13966
zf-RVT 1006-1081 aa
PF13456
RVT_3 1210-1330 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803134.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 5 | 220 | 1.3e-05 | 25.8 | Endonuclease/Exonuclease/phosphatase family |
XP_057803134.1 |
Pfam | PF00078 |
RVT_1 | Domain | 499 | 760 | 7.8e-30 | 105.0 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803134.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1006 | 1081 | 9.2e-15 | 55.8 | zinc-binding in reverse transcriptase |
XP_057803134.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1210 | 1330 | 2.4e-17 | 63.7 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。