当前解析结果
SmilChr01G001480| 统一新 Gene ID | SmilChr01G001480 |
|---|---|
| 名称 | SmilChr01G001480 |
| 描述 | aminotransferase ALD1 homolog |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 28572686 - 28573506 / - |
| NCBI Gene ID | LOC131018432 |
|---|---|
| GeneID | 131018432 |
| locus_tag | - |
| NCBI Name | LOC131018432 |
| 原始查询 | LOC131018432 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aminotransferase ALD1 homolog |
| 产物 | aminotransferase ALD1 homolog |
| Arabidopsis | AT4G33680 (AGD2)Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829510] identity=46; qcov=0.787; evalue=3.3e-12; confidence=low |
| Rice | Os03g0195100 (OsALD1)- identity=65.8; qcov=0.512; evalue=5.71e-13; confidence=low |
| GO | GO:0009507 (chloroplast); GO:0009862 (systemic acquired resistance, salicylic acid mediated signaling pathway); GO:0062034 (L-pipecolic acid biosynthetic process); GO:0062045 (L-lysine:pyruvate alpha-transaminase activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018432 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.40000 | XP_057803141.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057803141.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057803141.1 |
| 4 | Secreted | 分泌到胞外 | 0.20000 | XP_057803141.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803141.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:28572730 |
C |
CG |
1bp_insertion | frameshift_variant | 116 | A10,A11,A16,A18,A2,A21,A23,A24,A3,A7,A9,B101,B103,B104,B106,B108,B113,B115,B117,B120,B126,B127,B128,B13,B130,B132,B134,B136,B138,B139,B14,B15,B2,B24,B28,B30,B33,B34,B39,B4,B41,B44,B46,B51,B52,B56,B58,B59,B64,B65,B79,B8,B81,B82,B83,B88,B89,B90,B92,B93,B95,B96,B98,C10,C11,C13,C16,C17,C18,C2,C20,C22,C23,C26,C27,C3,C30,C33,C34,C35,C36,C38,C39,C4,C40,C43,C44,C46,C48,C5,C51,C52,C53,C54,C56,C59,C6,C60,C61,C62,C64,C65,C66,C69,C71,C74,C76,C77,C78,C79,C8,C83,C86,D2,D3,D8 |
Chr1:28572759 |
CTT |
C |
2bp_deletion | frameshift_variant | 1 | B20 |
Chr1:28572759 |
CTT |
C |
2bp_deletion | CDS_variant | 1 | B20 |
Chr1:28573085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B118,B80,C40 |
Chr1:28573105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C13,C7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。