Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001355

染色体: Chr03 坐标: 15917647-15919365 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001355
名称SmilChr03G001355
描述uncharacterized SmilChr03G001355
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向15917647 - 15919365 / -

ID 对照

NCBI Gene IDLOC131018450
GeneID131018450
locus_tag-
NCBI NameLOC131018450
原始查询LOC131018450

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low
产物zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low
ArabidopsisAT2G01050 (AT2G01050)
zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]
identity=29.7; qcov=0.318; evalue=3.13e-23; confidence=low
RiceOs12g0156200
-
identity=22.3; qcov=0.376; evalue=2.72e-07; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131018450

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057803154.1
2 Cytosol 细胞质基质 0.60000 XP_057803154.1
3 Nucleus 细胞核 0.40000 XP_057803154.1
4 Cytoplasmic granule 细胞质颗粒 0.40000 XP_057803154.1
5 Cytoplasmic ribonucleoprotein granule Cytoplasmic ribonucleoprotein granule 0.40000 XP_057803154.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:15917721 G A EMS_canonical_SNV CDS_variant 3 C77,C85,D7
Chr3:15917751 C T EMS_canonical_SNV CDS_variant 1 A4
Chr3:15917791 G A EMS_canonical_SNV CDS_variant 5 A4,C58,C77,C85,D7
Chr3:15917823 G A EMS_canonical_SNV stop_gained 3 C10,C21,C72
Chr3:15917823 G A EMS_canonical_SNV CDS_variant 3 C10,C21,C72
Chr3:15917824 CG C 1bp_deletion frameshift_variant 5 C13,C58,C77,C85,D7
Chr3:15917824 CG C 1bp_deletion CDS_variant 5 C13,C58,C77,C85,D7
Chr3:15917868 G A EMS_canonical_SNV stop_gained 1 B1
Chr3:15917868 G A EMS_canonical_SNV CDS_variant 1 B1
Chr3:15917927 C T EMS_canonical_SNV CDS_variant 5 C13,C58,C77,C85,D7
Chr3:15918025 CA C 1bp_deletion frameshift_variant 73 A1,A10,A13,A20,A23,A6,A7,A9,B1,B101,B102,B106,B112,B119,B121,B122,B124,B126,B129,B132,B138,B140,B15,B18,B2,B24,B28,B33,B34,B4,B41,B50,B6,B60,B61,B63,B68,B73,B77,B83,B84,B85,B86,B9,B91,C1,C10,C11,C12,C19,C21,C36,C37,C39,C46,C48,C51,C52,C55,C61,C62,C65,C67,C69,C72,C78,C79,C80,C83,C86,D10,D3,D8
Chr3:15918044 G A EMS_canonical_SNV CDS_variant 1 B42

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057947171.1
ATGCGTCTGCCTCCCAGGGGGTCGGGTACTGATTCCGACGCGGTTGCCGTCGGACTGCGATCTACTGGTAATTCATCAAATCTGACAAATAAGCAACCTACCCAGATTCTCACTTATTCCGACATCGTTAGCATCTCCCCTAAGCATGACGATAGAGTTTCTTATGCGGAGGCTACTGGCAAGAAGCCGGTGAAAATACCGGATTTGGCTGCTCACATTTTTCATGATCTGCGGCCTACTAAGGAGGGCGATCAGTTCTC...

CDS

1 records

下载 CDS FASTA
LOC131018450
ATGCGTCTGCCTCCCAGGGGGTCGGGTACTGATTCCGACGCGGTTGCCGTCGGACTGCGATCTACTGGTAATTCATCAAATCTGACAAATAAGCAACCTACCCAGATTCTCACTTATTCCGACATCGTTAGCATCTCCCCTAAGCATGACGATAGAGTTTCTTATGCGGAGGCTACTGGCAAGAAGCCGGTGAAAATACCGGATTTGGCTGCTCACATTTTTCATGATCTGCGGCCTACTAAGGAGGGCGATCAGTTCTC...

Protein

1 records

下载 Protein FASTA
XP_057803154.1
MRLPPRGSGTDSDAVAVGLRSTGNSSNLTNKQPTQILTYSDIVSISPKHDDRVSYAEATGKKPVKIPDLAAHIFHDLRPTKEGDQFSLKIPKDLYLKEIKAFEFALTGRLFLQKGDKPRSTMELKWELQRLWSLASDWQLIPLGKGYFTLRFTTAEDKATAKGKAVWELSKGLLRLREWTRNFDPFKENSPLADVWVRIHYLPIEYWNPQVISGIGRYLGHPLKIDGASARRDFGQFARILVEIDMSQNLPSALLIDGED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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