当前解析结果
SmilChr03G001518| 统一新 Gene ID | SmilChr03G001518 |
|---|---|
| 名称 | SmilChr03G001518 |
| 描述 | UDP-glycosyltransferase 83A1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 18641663 - 18644197 / - |
| NCBI Gene ID | LOC131018492 |
|---|---|
| GeneID | 131018492 |
| locus_tag | - |
| NCBI Name | LOC131018492 |
| 原始查询 | LOC131018492 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glycosyltransferase 83A1-like |
| 产物 | UDP-glycosyltransferase 83A1-like |
| Arabidopsis | AT3G02100 (AT3G02100)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820287] identity=38.6; qcov=1.02; evalue=2.28e-104; confidence=medium |
| Rice | Os03g0757200- identity=38.8; qcov=0.993; evalue=2.03e-110; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018492 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057803194.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057803194.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803194.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803194.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803194.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:18641665 |
A |
ATG |
2bp_insertion | frameshift_variant | 10 | A23,A4,B27,B35,B6,B71,B77,B99,C71,C78 |
Chr3:18641697 |
AT |
A |
1bp_deletion | frameshift_variant | 37 | A16,A25,A4,A9,B101,B110,B128,B134,B136,B137,B16,B23,B24,B26,B40,B45,B53,B65,B70,B77,B8,B93,B95,C1,C15,C4,C42,C49,C50,C53,C6,C60,C65,C70,C80,D2,D9 |
Chr3:18641725 |
A |
AC |
1bp_insertion | frameshift_variant | 6 | A23,A4,B6,B71,C38,C71 |
Chr3:18641732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B124,B18,B61,B85 |
Chr3:18641817 |
T |
TTC |
2bp_insertion | frameshift_variant | 1 | B74 |
Chr3:18641817 |
T |
TTC |
2bp_insertion | CDS_variant | 1 | B74 |
Chr3:18641981 |
C |
T |
EMS_canonical_SNV | stop_gained | 44 | A10,A11,A16,A3,A6,B103,B106,B11,B117,B126,B136,B137,B19,B30,B33,B36,B41,B42,B43,B48,B52,B54,B64,B68,B84,B86,C17,C18,C19,C2,C28,C30,C35,C41,C45,C5,C7,C72,C75,C76,C80,C84,D2,D5 |
Chr3:18641990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,C77 |
Chr3:18642019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr3:18642023 |
C |
CA |
1bp_insertion | frameshift_variant | 40 | A15,B100,B119,B120,B123,B125,B134,B14,B19,B20,B34,B56,B58,B60,B64,B65,B69,B73,B74,B78,B96,B97,C1,C14,C21,C24,C38,C40,C42,C52,C57,C58,C65,C71,C73,C85,C86,D1,D10,D4 |
Chr3:18642044 |
C |
T |
EMS_canonical_SNV | stop_gained | 85 | A1,A13,A16,A18,A21,A25,A4,A9,B10,B100,B101,B104,B106,B110,B115,B121,B128,B130,B134,B136,B137,B14,B140,B16,B23,B24,B26,B3,B34,B38,B39,B40,B44,B45,B47,B5,B51,B53,B57,B61,B65,B72,B77,B78,B8,B80,B82,B83,B86,B89,B93,B95,C11,C12,C14,C16,C17,C18,C2,C22,C23,C29,C3,C33,C36,C4,C41,C42,C49,C50,C51,C53,C56,C6,C60,C61,C65,C69,C70,C80,C87,D11,D2,D4,D9 |
Chr3:18642045 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | B134,B137,B16,B8,C42,C50,C60,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803194.1PF00201
UDPGT 267-430 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803194.1 |
Pfam | PF00201 |
UDPGT | Family | 267 | 430 | 4.4e-23 | 82.6 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。