Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001516`

染色体: Chr01 坐标: 29002455-29007271 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001516`
名称	SmilChr01G001516
描述	bZIP transcription factor 12-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	29002455 - 29007271 / `-`

ID 对照

NCBI Gene ID	`LOC131018627`
GeneID	`131018627`
locus_tag	`-`
NCBI Name	`LOC131018627`
原始查询	`LOC131018627`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bZIP transcription factor 12-like
产物	bZIP transcription factor 12-like
Arabidopsis	`AT5G44080` (AT5G44080) Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:834431] identity=47.2; qcov=0.746; evalue=8.1e-40; confidence=medium
Rice	`Os01g0867300` (BZIP12) - identity=36.5; qcov=1.1; evalue=2.61e-30; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0045893 (positive regulation of DNA-templated transcription)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2)
InterPro	-
eggNOG	-
NR	GeneID:131018627

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803325.1`
2	Chromosome	染色体	0.00000	`XP_057803325.1`
3	Centromere	着丝粒	0.00000	`XP_057803325.1`
4	Chromatin	染色质	0.00000	`XP_057803325.1`
5	Telomere	端粒	0.00000	`XP_057803325.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:29002836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr1:29005917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr1:29006261`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr1:29006317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C10,C2,C9
`Chr1:29006602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B121,B33,B60
`Chr1:29006608`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803325.1

297 aa

148

297

bZIP_1

bZIP_2

PF00170 bZIP_1 217-277 aa PF07716 bZIP_2 218-269 aa

XP_057803327.1

287 aa

144

287

bZIP_1

bZIP_2

PF00170 bZIP_1 217-262 aa PF07716 bZIP_2 218-262 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803325.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	217	277	3.2e-10	40.7	bZIP transcription factor
`XP_057803325.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	218	269	8.6e-09	36.0	Basic region leucine zipper
`XP_057803327.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	217	262	3.1e-10	40.7	bZIP transcription factor
`XP_057803327.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	218	262	6.6e-09	36.4	Basic region leucine zipper

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057947344.1
ATGTCCTACAATTTGTTTGAAAAAATTGAGAAACATCTTTAAATTATAGGTGTTCCGTAGAATATGAAATGAATGCATACATTAATAGTACAAATTAAAGTATACTGAAAAGCAGAAAGTTAAAAAAAGACGTTAGGTGCCAATCCGTAACTAGCGAGTACGAAAAACTTTGATTACTCTCGCAAAAGGGGCTGCAGTCGCCCATTTCTTTTATCTTCGTCTCTGACTCTCTCTCTCTCTCTAGTCCCTTACTTTCTCTC...

XM_057947342.1
ATGTCCTACAATTTGTTTGAAAAAATTGAGAAACATCTTTAAATTATAGGTGTTCCGTAGAATATGAAATGAATGCATACATTAATAGTACAAATTAAAGTATACTGAAAAGCAGAAAGTTAAAAAAAGACGTTAGGTGCCAATCCGTAACTAGCGAGTACGAAAAACTTTGATTACTCTCGCAAAAGGGGCTGCAGTCGCCCATTTCTTTTATCTTCGTCTCTGACTCTCTCTCTCTCTCTAGTCCCTTACTTTCTCTC...

CDS

2 records

下载 CDS FASTA

LOC131018627
ATGTTGATGGCGTCGTCGAGGGTGATCGCGTCCAGGTCACCGCCCAATTCGGATCTGCCGCGTGACTCCCCAACCTCCTCCATAAATATCCACTCCGATCAAGCAGCTAGGGGTTTCGGCTCCATGAATATGGACGAAATCTTCCGGAACATCTACCCCGATTCCACCTCATTCGACAACGGCGCCGCTGGCGGAGAAGCTGCCTCGGGGGGAGGATTGTCCTCCGTGGACGGCGGAGACGGAGGAGTGAGGAATGGCGG...

Protein

2 records

下载 Protein FASTA

XP_057803325.1
MLMASSRVIASRSPPNSDLPRDSPTSSINIHSDQAARGFGSMNMDEIFRNIYPDSTSFDNGAAGGEAASGGGLSSVDGGDGGVRNGGGSKTVEEVWRDIVTGGGGGGGGGVSGGETAMTLEDFLAKAGAVNEEDVRVPAVVTMPPPPPAVGGFGMEGVMMSPAPGVPAVQFAAAGCVQNVIGVEFGSGMAAVSGSVGGGGRGKRRVAVDEVPLDKATQQKQRRMIKNRESAARSRERKQAYTVEMEAMVTSLEEEHARLL...

XP_057803327.1
MLMASSRVIASRSPPNSDLPRDSPTSSINIHSDQAARGFGSMNMDEIFRNIYPDSTSFDNGAAGGEAASGGGLSSVDGGDGGVRNGGGSKTVEEVWRDIVTGGGGGGGGGVSGGETAMTLEDFLAKAGAVNEEDVRVPAVVTMPPPPPAVGGFGMEGVMMSPAPGVPAVQFAAAGCVQNVIGVEFGSGMAAVSGSVGGGGRGKRRVAVDEVPLDKATQQKQRRMIKNRESAARSRERKQAYTVEMEAMVTSLEEEHARLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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