当前解析结果
SmilChr03G002084| 统一新 Gene ID | SmilChr03G002084 |
|---|---|
| 名称 | SmilChr03G002084 |
| 描述 | uncharacterized SmilChr03G002084 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 32052454 - 32055245 / + |
| NCBI Gene ID | LOC131018661 |
|---|---|
| GeneID | 131018661 |
| locus_tag | - |
| NCBI Name | LOC131018661 |
| 原始查询 | LOC131018661 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | double-stranded DNA-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:839863]; symbol=AT1G29850; hit=AT1G29850; species=arabidopsis; confidence=weak |
| 产物 | double-stranded DNA-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:839863]; symbol=AT1G29850; hit=AT1G29850; species=arabidopsis; confidence=weak |
| Arabidopsis | AT1G29850 (AT1G29850)double-stranded DNA-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:839863] identity=39.6; qcov=0.176; evalue=3.63e-13; confidence=weak |
| Rice | Os05g0547850 (OsPDCD5)- identity=36; qcov=0.214; evalue=3.19e-12; confidence=weak |
| GO | GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0005829 (cytosol) |
| KEGG | - |
| Pfam | PF01984 (dsDNA_bind); PF03004 (Transposase_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018661 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803358.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057803358.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057803358.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057803358.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057803358.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:32052944 |
G |
A |
EMS_canonical_SNV | stop_gained | 123 | A10,A11,A14,A16,A18,A19,A21,A24,A7,A9,B10,B101,B103,B106,B107,B108,B109,B112,B118,B119,B120,B121,B122,B124,B125,B127,B133,B134,B137,B14,B16,B18,B21,B22,B23,B26,B30,B35,B36,B37,B42,B43,B45,B49,B5,B50,B56,B58,B59,B60,B61,B64,B66,B67,B68,B69,B70,B74,B76,B77,B79,B80,B81,B82,B85,B89,B94,B95,B96,B97,B98,C1,C10,C13,C15,C16,C17,C18,C20,C22,C23,C26,C3,C32,C33,C34,C36,C37,C38,C4,C40,C41,C43,C44,C45,C46,C47,C48,C5,C55,C57,C59,C6,C60,C61,C68,C70,C72,C73,C74,C76,C77,C8,C81,C82,C85,C87,D1,D10,D11,D4,D8,D9 |
Chr3:32053156 |
C |
T |
EMS_canonical_SNV | stop_gained | 21 | A10,A14,A16,B121,B133,B134,B137,B26,B64,B66,B70,B79,B82,B85,B94,C32,C68,C73,C8,C81,D4 |
Chr3:32053259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:32053337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B23,C87 |
Chr3:32053382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,C35,C40 |
Chr3:32053398 |
GC |
G |
1bp_deletion | frameshift_variant | 32 | A19,A21,A24,B101,B107,B108,B119,B120,B122,B124,B14,B18,B21,B22,B30,B42,B56,B67,B68,B81,B96,C10,C13,C22,C23,C26,C36,C47,C5,C74,C76,C87 |
Chr3:32053498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B65,D6 |
Chr3:32053541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:32053566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C54 |
Chr3:32053594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,B23,C87 |
Chr3:32053657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr3:32053949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,C45,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803358.1PF01984
dsDNA_bind 17-119 aa
PF03004
Transposase_24 323-442 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803358.1 |
Pfam | PF01984 |
dsDNA_bind | Family | 17 | 119 | 9.6e-15 | 55.5 | Double-stranded DNA-binding domain |
XP_057803358.1 |
Pfam | PF03004 |
Transposase_24 | Family | 323 | 442 | 2e-10 | 41.7 | Plant transposase (Ptta/En/Spm family) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。