当前解析结果
SmilChr03G002114| 统一新 Gene ID | SmilChr03G002114 |
|---|---|
| 名称 | SmilChr03G002114 |
| 描述 | uncharacterized SmilChr03G002114 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 32887408 - 32889357 / + |
| NCBI Gene ID | LOC131018669 |
|---|---|
| GeneID | 131018669 |
| locus_tag | - |
| NCBI Name | LOC131018669 |
| 原始查询 | LOC131018669 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=weak |
| 产物 | hit=Os12g0292200; species=rice; confidence=weak |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=37.5; qcov=0.128; evalue=3.75e-06; confidence=weak |
| Rice | Os12g0292200- identity=43.6; qcov=0.167; evalue=3.21e-17; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018669 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803366.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057803366.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803366.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803366.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803366.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:32887436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,D7 |
Chr3:32887475 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:32887490 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B48,D5 |
Chr3:32887516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr3:32887690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B118,B121,B124,B8,C8 |
Chr3:32887963 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B54,B86 |
Chr3:32887963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,B86 |
Chr3:32888008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B113,B131,B4,B99 |
Chr3:32888272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr3:32888327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,B86 |
Chr3:32888419 |
C |
T |
EMS_canonical_SNV | stop_gained | 26 | A19,B10,B102,B111,B113,B118,B127,B131,B138,B37,B4,B67,B75,B79,B94,B95,B97,B99,C40,C43,C44,C46,C53,C64,C82,D11 |
Chr3:32888608 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。