当前解析结果
SmilChr03G002131| 统一新 Gene ID | SmilChr03G002131 |
|---|---|
| 名称 | SmilChr03G002131 |
| 描述 | uncharacterized SmilChr03G002131 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 33181393 - 33182652 / - |
| NCBI Gene ID | LOC131018673 |
|---|---|
| GeneID | 131018673 |
| locus_tag | - |
| NCBI Name | LOC131018673 |
| 原始查询 | LOC131018673 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | confidence=no_hit |
| 产物 | confidence=no_hit |
| Arabidopsis | -- |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018673 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803370.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057803370.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057803370.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803370.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803370.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:33181426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B108,B33,C28,C72 |
Chr3:33181432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B46 |
Chr3:33181442 |
C |
T |
EMS_canonical_SNV | stop_gained | 82 | A11,A14,A18,A2,A22,A23,A3,A6,A9,B100,B104,B108,B109,B111,B117,B127,B128,B129,B131,B137,B140,B15,B18,B20,B24,B25,B26,B30,B35,B46,B5,B53,B55,B56,B6,B64,B66,B73,B76,B79,B85,B87,B88,B92,B94,B96,C11,C13,C19,C20,C21,C23,C27,C29,C30,C33,C36,C42,C45,C47,C50,C51,C54,C56,C58,C60,C61,C65,C67,C69,C70,C74,C75,C78,C82,C83,C84,C85,C9,D11,D7,D8 |
Chr3:33181447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C63 |
Chr3:33181517 |
TC |
T |
1bp_deletion | frameshift_variant | 237 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A5,A6,A7,A8,A9,B1,B100,B101,B102,B103,B104,B105,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B120,B121,B122,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B34,B35,B36,B37,B38,B39,B4,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B61,B63,B64,B65,B66,B67,B68,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C40,C41,C42,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C9,D1,D10,D11,D2,D4,D6,D7,D8,D9 |
Chr3:33181520 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B57,C2,C32,C68 |
Chr3:33181527 |
CA |
C |
1bp_deletion | frameshift_variant | 11 | A4,B110,B113,B129,C14,C20,C25,C37,C4,C5,C9 |
Chr3:33181551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B54,B57,C7 |
Chr3:33181584 |
G |
A |
EMS_canonical_SNV | stop_gained | 189 | A10,A11,A13,A14,A15,A20,A21,A22,A24,A25,A3,A4,A5,A6,A8,B1,B100,B101,B102,B103,B105,B106,B107,B110,B112,B113,B115,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B128,B129,B130,B132,B133,B134,B136,B137,B138,B140,B16,B17,B18,B19,B2,B21,B22,B24,B25,B27,B28,B29,B32,B33,B34,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B46,B47,B49,B50,B51,B52,B55,B58,B59,B61,B62,B63,B64,B65,B67,B68,B69,B70,B71,B72,B73,B74,B75,B77,B78,B8,B81,B82,B83,B84,B85,B88,B9,B90,B91,B92,B93,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C30,C31,C32,C33,C36,C37,C38,C39,C4,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C64,C67,C69,C70,C73,C75,C77,C78,C79,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr3:33181590 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | A14,B102,B124,C18,C43,C8,D2 |
Chr3:33181591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:33181596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。