当前解析结果
SmilChr03G002397| 统一新 Gene ID | SmilChr03G002397 |
|---|---|
| 名称 | SmilChr03G002397 |
| 描述 | uncharacterized SmilChr03G002397 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 37983191 - 37984384 / - |
| NCBI Gene ID | LOC131018758 |
|---|---|
| GeneID | 131018758 |
| locus_tag | - |
| NCBI Name | LOC131018758 |
| 原始查询 | LOC131018758 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak |
| 产物 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=37.3; qcov=0.186; evalue=3.88e-07; confidence=weak |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018758 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803445.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057803445.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057803445.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803445.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803445.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:37983200 |
A |
AC |
1bp_insertion | frameshift_variant | 15 | A20,B104,B114,B137,B16,B38,B39,B75,B91,C18,C19,C39,C87,D6,D7 |
Chr3:37983263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:37983272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr3:37983275 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B63 |
Chr3:37983275 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B63 |
Chr3:37983323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B28,B46,C83,D3 |
Chr3:37983347 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr3:37983360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr3:37983424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:37983437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr3:37983451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr3:37983455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。