Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001548`

染色体: Chr01 坐标: 29464276-29470344 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001548`
名称	SmilChr01G001548
描述	uncharacterized SmilChr01G001548
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	29464276 - 29470344 / `+`

ID 对照

NCBI Gene ID	`LOC131018773`
GeneID	`131018773`
locus_tag	`-`
NCBI Name	`LOC131018773`
原始查询	`LOC131018773`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chromosome-partitioning protein, putative (DUF639) [Source:NCBI gene (formerly Entrezgene);Acc:843465]; symbol=AT1G71240; hit=AT1G71240; species=arabidopsis; confidence=high
产物	chromosome-partitioning protein, putative (DUF639) [Source:NCBI gene (formerly Entrezgene);Acc:843465]; symbol=AT1G71240; hit=AT1G71240; species=arabidopsis; confidence=high
Arabidopsis	`AT1G71240` (AT1G71240) chromosome-partitioning protein, putative (DUF639) [Source:NCBI gene (formerly Entrezgene);Acc:843465] identity=58.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0869000` (P0677H08.27-3) - identity=60.3; qcov=1; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF04842 (DUF639)
InterPro	-
eggNOG	-
NR	GeneID:131018773

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057803473.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057803473.1`
3	Chloroplast	叶绿体	0.20000	`XP_057803464.1`
4	Nucleus membrane	核膜	0.20000	`XP_057803473.1`
5	Chloroplast membrane	叶绿体膜	0.20000	`XP_057803464.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:29464612`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	B123
`Chr1:29464612`	`TCG`	`T`	2bp_deletion	CDS_variant	1	B123
`Chr1:29464620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B135,C7,D7
`Chr1:29464683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr1:29464816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B120,B95,C34,C76
`Chr1:29467276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B65,B87,C26
`Chr1:29468650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr1:29468824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,B82
`Chr1:29468914`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B3,B86,C15,C80
`Chr1:29468949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr1:29469036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,C35
`Chr1:29469091`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803464.1

830 aa

415

830

DUF639

PF04842 DUF639 582-811 aa

XP_057803468.1

829 aa

414

829

DUF639

PF04842 DUF639 581-810 aa

XP_057803473.1

677 aa

338

677

DUF639

PF04842 DUF639 429-658 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803464.1`	Pfam	`PF04842`	DUF639	Family	582	811	3.5e-77	259.7	Plant protein of unknown function (DUF639)
`XP_057803468.1`	Pfam	`PF04842`	DUF639	Family	581	810	3.5e-77	259.7	Plant protein of unknown function (DUF639)
`XP_057803473.1`	Pfam	`PF04842`	DUF639	Family	429	658	2.4e-77	260.2	Plant protein of unknown function (DUF639)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057947481.1
GCACTAATTTTATTTTTCTAAAAAAATATCTTAACTTTTTAAAATGGGCCTACGTTTTTGGTTGTTACCAATTCAAGCGTAGCTTGCATTACTTCGCGAAGTAGCCTTTGTCTGCTTCCTCATTTTCCCTTTGCTTTTCTGGGACCGATTTAATCTGCTCTTTCTGCTAATTTGTCCTTGTTTAGCAATGTTTATCCTTTGGCCTATAATCTTGAATCAAGAATTTAAAGTAACGAATCTTGAAAGTTGAGAAAAAAAAT...

XM_057947485.1
GCACTAATTTTATTTTTCTAAAAAAATATCTTAACTTTTTAAAATGGGCCTACGTTTTTGGTTGTTACCAATTCAAGCGTAGCTTGCATTACTTCGCGAAGTAGCCTTTGTCTGCTTCCTCATTTTCCCTTTGCTTTTCTGGGACCGATTTAATCTGCTCTTTCTGCTAATTTGTCCTTGTTTAGCAATGTTTATCCTTTGGCCTATAATCTTGAATCAAGAATTTAAAGTAACGAATCTTGAAAGTTGAGAAAAAAAAT...

CDS

3 records

下载 CDS FASTA

LOC131018773
ATGCTCTCGAGATTCCCAGTAGAAACACCCCACATAAGGCCAACCCCTAAATCTTCTGCAACTTTTCATCATAAGCAGAATCTGTTTTTCAAGATTGCTTGCTGTGTGAAGAATGGTTCCTCGGATTCTCCGAATTCATCACCTCCTTCTTCGACCCCGGATAACAAATTTGGGTTCAAGCTGGTGGGGCAGTCTCTTGGCGATATCAATCGGAAGTTCAATGATATTGATACAAATTCAATGCAAGAATCAGTAAACCA...

Protein

3 records

下载 Protein FASTA

XP_057803464.1
MLSRFPVETPHIRPTPKSSATFHHKQNLFFKIACCVKNGSSDSPNSSPPSSTPDNKFGFKLVGQSLGDINRKFNDIDTNSMQESVNQWLSKTQNFFNEVTSPLVKSVHDRKPSPQSDSEDMDDVFIIEPTIDSRTPGGELSEAAIVSIEQFSRMNGLTGQKMQKIFKALVPESVYNDPRYLVEYCCFRFLSRNNVEVHPSLKEPAFRRLIFITMLAWENPLRKGKGNRVKLFKGSNFQKKLVGEEAFVRIAPAVSGVADC...

XP_057803468.1
MLSRFPVETPHIRPTPKSSATFHHKQNLFFKIACCVKNGSSDSPNSSPPSSTPDNKFGFKLVGQSLGDINRKFNDIDTNSMQESVNQWLSKTQNFFNEVTSPLVKSVHDRKPSPQSDSEDMDDVFIIEPTIDSRTPGGELSEAAIVSIEQFSRMNGLTGQKMQKIFKALVPESVYNDPRYLVEYCCFRFLSRNNVEVHPSLKEPAFRRLIFITMLAWENPLRKGKGNRVKLFKGSNFQKLVGEEAFVRIAPAVSGVADCP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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