当前解析结果
SmilChr03G002446| 统一新 Gene ID | SmilChr03G002446 |
|---|---|
| 名称 | SmilChr03G002446 |
| 描述 | uncharacterized SmilChr03G002446 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 38853887 - 38857649 / - |
| NCBI Gene ID | LOC131018780 |
|---|---|
| GeneID | 131018780 |
| locus_tag | - |
| NCBI Name | LOC131018780 |
| 原始查询 | LOC131018780 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=23.5; qcov=0.82; evalue=6.39e-42; confidence=weak |
| Rice | Os06g0704400- identity=27.4; qcov=0.967; evalue=7.96e-70; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018780 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803469.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057803469.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057803469.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057803469.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057803469.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:38853972 |
CT |
C |
1bp_deletion | frameshift_variant | 11 | B138,B14,B25,B40,B58,B68,B90,B94,B99,C58,C73 |
Chr3:38853980 |
A |
AT |
1bp_insertion | frameshift_variant | 6 | B130,B7,B93,C19,C78,C83 |
Chr3:38854095 |
TC |
T |
1bp_deletion | frameshift_variant | 145 | A10,A11,A14,A15,A16,A18,A2,A21,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B100,B102,B103,B107,B108,B11,B111,B113,B114,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B136,B138,B140,B15,B16,B17,B18,B20,B21,B22,B24,B25,B26,B28,B30,B32,B37,B40,B46,B47,B49,B54,B56,B57,B58,B6,B60,B63,B64,B68,B69,B7,B71,B72,B73,B74,B75,B76,B79,B8,B80,B81,B83,B84,B85,B86,B87,B88,B89,B93,C11,C13,C14,C16,C18,C19,C21,C24,C26,C28,C29,C31,C32,C33,C36,C37,C38,C4,C40,C41,C44,C47,C48,C49,C51,C52,C55,C57,C58,C60,C62,C65,C68,C69,C71,C72,C73,C74,C78,C8,C82,C83,C84,C87,C9,D1,D10,D11,D2,D3,D4,D5 |
Chr3:38854100 |
T |
TGA |
2bp_insertion | frameshift_variant | 20 | A2,A23,A5,A8,B107,B123,B138,B139,B26,B34,B35,B84,B86,B88,C19,C31,C46,C7,C75,C87 |
Chr3:38854104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr3:38854279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr3:38854280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr3:38854410 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B119,B71 |
Chr3:38854433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B78,C27,C32,C68 |
Chr3:38854449 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B4,B9 |
Chr3:38854449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,B9 |
Chr3:38854451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B123,B46,C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803469.1PF03108
DBD_Tnp_Mut 169-232 aa
PF10551
MULE 360-457 aa
PF00872
Transposase_mut 379-492 aa
PF04434
SWIM 573-601 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803469.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 169 | 232 | 1.3e-06 | 28.6 | MuDR family transposase |
XP_057803469.1 |
Pfam | PF10551 |
MULE | Domain | 360 | 457 | 2.1e-16 | 60.8 | MULE transposase domain |
XP_057803469.1 |
Pfam | PF00872 |
Transposase_mut | Family | 379 | 492 | 3.2e-07 | 30.3 | Transposase, Mutator family |
XP_057803469.1 |
Pfam | PF04434 |
SWIM | Domain | 573 | 601 | 1.8e-08 | 34.4 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。