当前解析结果
SmilChr03G002700| 统一新 Gene ID | SmilChr03G002700 |
|---|---|
| 名称 | SmilChr03G002700 |
| 描述 | uncharacterized SmilChr03G002700 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 42965603 - 42969421 / + |
| NCBI Gene ID | LOC131018835 |
|---|---|
| GeneID | 131018835 |
| locus_tag | - |
| NCBI Name | LOC131018835 |
| 原始查询 | LOC131018835 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=27; qcov=0.492; evalue=1.41e-52; confidence=low |
| Rice | Os06g0484800- identity=28.7; qcov=0.708; evalue=3.91e-101; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018835 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803521.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057803521.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803521.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803521.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803521.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:42965611 |
C |
CCA |
2bp_insertion | frameshift_variant | 6 | B135,B3,B45,B49,C58,C87 |
Chr3:42965634 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B32,B63,B64,C28,C34 |
Chr3:42965651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr3:42965685 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B63,C34,C74 |
Chr3:42965685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B63,C34,C74 |
Chr3:42965700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr3:42965723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr3:42965724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr3:42965725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B22,B36 |
Chr3:42965729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B22,B36 |
Chr3:42965756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,B22 |
Chr3:42965768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803521.1PF03372
Exo_endo_phos 11-93 aa
PF00078
RVT_1 364-529 aa
PF13966
zf-RVT 812-880 aa
PF13456
RVT_3 990-1111 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803521.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 11 | 93 | 7.5e-06 | 26.6 | Endonuclease/Exonuclease/phosphatase family |
XP_057803521.1 |
Pfam | PF00078 |
RVT_1 | Domain | 364 | 529 | 2.7e-21 | 77.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803521.1 |
Pfam | PF13966 |
zf-RVT | Domain | 812 | 880 | 1.1e-18 | 68.4 | zinc-binding in reverse transcriptase |
XP_057803521.1 |
Pfam | PF13456 |
RVT_3 | Domain | 990 | 1111 | 7e-12 | 46.1 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。