当前解析结果
SmilChr03G002718| 统一新 Gene ID | SmilChr03G002718 |
|---|---|
| 名称 | SmilChr03G002718 |
| 描述 | uncharacterized SmilChr03G002718 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 43200851 - 43202215 / - |
| NCBI Gene ID | LOC131018841 |
|---|---|
| GeneID | 131018841 |
| locus_tag | - |
| NCBI Name | LOC131018841 |
| 原始查询 | LOC131018841 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319]; symbol=AT3G01410; hit=AT3G01410; species=arabidopsis; confidence=weak |
| 产物 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319]; symbol=AT3G01410; hit=AT3G01410; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=36.6; qcov=0.295; evalue=3.55e-16; confidence=weak |
| Rice | Os10g0458700- identity=35.2; qcov=0.282; evalue=9.78e-13; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018841 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803526.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057803526.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803526.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803526.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803526.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:43200859 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B1,B100,B102,C53 |
Chr3:43200859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B100,B102,C53 |
Chr3:43200931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C46,C82 |
Chr3:43200946 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B32,C55,D6,D8 |
Chr3:43200946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,C55,D6,D8 |
Chr3:43200947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:43200952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B76,C2 |
Chr3:43200994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B109,B112,C79 |
Chr3:43200996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B100,B102,C53 |
Chr3:43201015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr3:43201042 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | B1,B100,B102,C53 |
Chr3:43201042 |
G |
GA |
1bp_insertion | CDS_variant | 4 | B1,B100,B102,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803526.1PF17919
RT_RNaseH_2 15-95 aa
PF17917
RT_RNaseH 26-127 aa
PF00075
RNase_H 177-296 aa
PF13456
RVT_3 179-298 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803526.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 15 | 95 | 5.8e-16 | 59.1 | RNase H-like domain found in reverse transcriptase |
XP_057803526.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 26 | 127 | 7.2e-24 | 84.7 | RNase H-like domain found in reverse transcriptase |
XP_057803526.1 |
Pfam | PF00075 |
RNase_H | Domain | 177 | 296 | 3.9e-08 | 34.3 | RNase H |
XP_057803526.1 |
Pfam | PF13456 |
RVT_3 | Domain | 179 | 298 | 3.5e-18 | 66.4 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。