当前解析结果
SmilChr03G003068| 统一新 Gene ID | SmilChr03G003068 |
|---|---|
| 名称 | SmilChr03G003068 |
| 描述 | uncharacterized SmilChr03G003068 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 47637794 - 47638543 / + |
| NCBI Gene ID | LOC131018909 |
|---|---|
| GeneID | 131018909 |
| locus_tag | - |
| NCBI Name | LOC131018909 |
| 原始查询 | LOC131018909 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0521000; species=rice; confidence=low |
| 产物 | hit=Os06g0521000; species=rice; confidence=low |
| Arabidopsis | AT1G66235 (AT1G66235)no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939] identity=26.8; qcov=0.663; evalue=1.38e-09; confidence=low |
| Rice | Os06g0521000- identity=31.1; qcov=0.635; evalue=4.61e-16; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018909 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803581.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057803581.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057803581.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057803581.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057803581.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:47637816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,A6,B11,B89 |
Chr3:47637822 |
A |
AT |
1bp_insertion | frameshift_variant | 89 | A1,A10,A11,A13,A14,A16,A18,A19,A24,A25,A3,A5,A6,B10,B101,B109,B110,B111,B114,B115,B123,B128,B133,B138,B139,B14,B15,B16,B2,B29,B31,B32,B33,B34,B38,B39,B56,B61,B66,B67,B7,B71,B72,B8,B82,B83,B86,B87,B89,B9,B90,B91,B93,B96,B99,C13,C22,C25,C27,C3,C30,C32,C36,C37,C38,C42,C48,C52,C54,C55,C59,C60,C61,C62,C64,C66,C68,C70,C73,C75,C8,C81,C83,C84,C85,D1,D5,D7,D8 |
Chr3:47637829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C20 |
Chr3:47637833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,C35,C86 |
Chr3:47637842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr3:47637851 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B20,B77,C9 |
Chr3:47637865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr3:47637879 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,C20,C25 |
Chr3:47637903 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,D6 |
Chr3:47637904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr3:47637941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,B86 |
Chr3:47637950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B140,C1,C4,C65 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。