当前解析结果
SmilChr03G003180| 统一新 Gene ID | SmilChr03G003180 |
|---|---|
| 名称 | SmilChr03G003180 |
| 描述 | uncharacterized SmilChr03G003180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 49256691 - 49257479 / - |
| NCBI Gene ID | LOC131018931 |
|---|---|
| GeneID | 131018931 |
| locus_tag | - |
| NCBI Name | LOC131018931 |
| 原始查询 | LOC131018931 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os11g0303800; species=rice; confidence=weak |
| 产物 | hit=Os11g0303800; species=rice; confidence=weak |
| Arabidopsis | AT1G66235 (AT1G66235)no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939] identity=26.7; qcov=0.5; evalue=4.01e-11; confidence=low |
| Rice | Os11g0303800- identity=24.5; qcov=0.935; evalue=6.14e-16; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018931 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803599.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057803599.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057803599.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057803599.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057803599.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:49256692 |
TA |
T |
1bp_deletion | frameshift_variant | 3 | B23,B76,C35 |
Chr3:49256692 |
TA |
T |
1bp_deletion | CDS_variant | 3 | B23,B76,C35 |
Chr3:49256695 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B126 |
Chr3:49256695 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B126 |
Chr3:49256697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B113,B124,C10,C58,C9 |
Chr3:49256698 |
G |
GT |
1bp_insertion | frameshift_variant | 4 | B108,B18,B55,C11 |
Chr3:49256698 |
G |
GT |
1bp_insertion | CDS_variant | 4 | B108,B18,B55,C11 |
Chr3:49256727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B136,B24,C25,C35 |
Chr3:49256728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B126 |
Chr3:49256729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C38,D3 |
Chr3:49256751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B13,B132,C70 |
Chr3:49256757 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B115,B29,B31,B41 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。