当前解析结果
SmilChr03G003227| 统一新 Gene ID | SmilChr03G003227 |
|---|---|
| 名称 | SmilChr03G003227 |
| 描述 | uncharacterized SmilChr03G003227 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 49989855 - 49992849 / - |
| NCBI Gene ID | LOC131018942 |
|---|---|
| GeneID | 131018942 |
| locus_tag | - |
| NCBI Name | LOC131018942 |
| 原始查询 | LOC131018942 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=weak |
| 产物 | hit=Os04g0191000; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=43.8; qcov=0.13; evalue=1.01e-20; confidence=weak |
| Rice | Os04g0191000- identity=48.9; qcov=0.188; evalue=2e-30; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018942 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803608.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057803608.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057803608.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057803608.1 |
| 5 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057803608.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:49989866 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B77,C79 |
Chr3:49989866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C79 |
Chr3:49989867 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | A6,B113,B69,B95,C55,C7,C79 |
Chr3:49989879 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr3:49990337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr3:49990385 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr3:49990433 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | A14,B132 |
Chr3:49990433 |
TG |
T |
1bp_deletion | CDS_variant | 2 | A14,B132 |
Chr3:49990586 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B130,B32,B39,C11 |
Chr3:49990995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B134,C84,C87 |
Chr3:49991005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,C84,C87 |
Chr3:49991029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B44,C15,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803608.1PF19259
Ty3_capsid 38-199 aa
PF03732
PEG10_N-capsid 39-117 aa
PF00098
zf-CCHC 298-314 aa
PF08284
RVP_2 372-500 aa
PF13650
Asp_protease_2 394-481 aa
PF13975
gag-asp_proteas 394-483 aa
PF30863
PRO_PEG10-RTL1 403-501 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803608.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 38 | 199 | 2.1e-07 | 31.3 | Ty3 transposon capsid-like protein |
XP_057803608.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 39 | 117 | 1.8e-09 | 38.5 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057803608.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 298 | 314 | 7.2e-06 | 26.6 | Zinc knuckle |
XP_057803608.1 |
Pfam | PF08284 |
RVP_2 | Domain | 372 | 500 | 1.4e-27 | 96.9 | Retroviral aspartyl protease |
XP_057803608.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 394 | 481 | 2.3e-10 | 41.7 | Aspartyl protease |
XP_057803608.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 394 | 483 | 1e-10 | 42.8 | gag-polyprotein putative aspartyl protease |
XP_057803608.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 403 | 501 | 1.1e-11 | 45.8 | PEG10/RTL1 protease domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。