Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003241`

染色体: Chr03 坐标: 50306234-50312302 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003241`
名称	SmilChr03G003241
描述	uncharacterized SmilChr03G003241
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	50306234 - 50312302 / `-`

ID 对照

NCBI Gene ID	`LOC131018946`
GeneID	`131018946`
locus_tag	`-`
NCBI Name	`LOC131018946`
原始查询	`LOC131018946`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=medium
产物	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G04710` (TPR10) ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629] identity=35.1; qcov=0.844; evalue=7.46e-34; confidence=medium
Rice	`Os02g0492000` (P0579G08.17-1) - identity=37.1; qcov=0.848; evalue=1.69e-32; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131018946

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057803612.1`
2	Cytoplasm	细胞质	0.80000	`XP_057803612.1`
3	Nucleoplasm	核质	0.20000	`XP_057803612.1`
4	Chromosome	染色体	0.00000	`XP_057803612.1`
5	Centromere	着丝粒	0.00000	`XP_057803612.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:50307381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr3:50307522`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B23
`Chr3:50307522`	`GA`	`G`	1bp_deletion	CDS_variant	1	B23
`Chr3:50312233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B40,B44,B70,C65,C85
`Chr3:50312262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803612.1

270 aa

135

270

Ank_2

Ank

Ank_4

Ank

Ank_4

Ank_5

Ank_2

Ank

Ank_3

Ank_4

Ank_3

Ank

Ank_2

PF12796 Ank_2 50-127 aa PF00023 Ank 69-98 aa PF13637 Ank_4 73-123 aa PF00023 Ank 103-127 aa PF13637 Ank_4 115-156 aa PF13857 Ank_5 122-175 aa PF12796 Ank_2 132-195 aa PF00023 Ank 136-161 aa PF13606 Ank_3 136-161 aa PF13637 Ank_4 140-188 aa PF13606 Ank_3 170-194 aa PF00023 Ank 170-195 aa PF12796 Ank_2 204-261 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803612.1`	Pfam	`PF12796`	Ank_2	Repeat	50	127	5.5e-35	120.5	Ankyrin repeats (3 copies)
`XP_057803612.1`	Pfam	`PF00023`	Ank	Repeat	69	98	4.3e-33	112.2	Ankyrin repeat
`XP_057803612.1`	Pfam	`PF13637`	Ank_4	Repeat	73	123	1.5e-26	92.5	Ankyrin repeats (many copies)
`XP_057803612.1`	Pfam	`PF00023`	Ank	Repeat	103	127	4.3e-33	112.2	Ankyrin repeat
`XP_057803612.1`	Pfam	`PF13637`	Ank_4	Repeat	115	156	1.5e-26	92.5	Ankyrin repeats (many copies)
`XP_057803612.1`	Pfam	`PF13857`	Ank_5	Repeat	122	175	1e-16	61.5	Ankyrin repeats (many copies)
`XP_057803612.1`	Pfam	`PF12796`	Ank_2	Repeat	132	195	5.5e-35	120.5	Ankyrin repeats (3 copies)
`XP_057803612.1`	Pfam	`PF00023`	Ank	Repeat	136	161	4.3e-33	112.2	Ankyrin repeat
`XP_057803612.1`	Pfam	`PF13606`	Ank_3	Repeat	136	161	2e-26	89.5	Ankyrin repeat
`XP_057803612.1`	Pfam	`PF13637`	Ank_4	Repeat	140	188	1.5e-26	92.5	Ankyrin repeats (many copies)
`XP_057803612.1`	Pfam	`PF13606`	Ank_3	Repeat	170	194	2e-26	89.5	Ankyrin repeat
`XP_057803612.1`	Pfam	`PF00023`	Ank	Repeat	170	195	4.3e-33	112.2	Ankyrin repeat
`XP_057803612.1`	Pfam	`PF12796`	Ank_2	Repeat	204	261	5.5e-35	120.5	Ankyrin repeats (3 copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947629.1
ATGTCATTGTCAATATCCTTCTGCTTCTTGTATGATGAGCGAGAGGTGAAGGTTCCTACAAATCTCTCTGGTCTTGTCGACAGGTGCTCTGATTCGAAGGCTGCAGCTGAGGGAGACCCTAAACAACTCAGGGAGATCAGAAAGAAGTTTGAGGCAGTCAGAGACTTAAAGCAAATCTGCGATGTATACAGTGACTTCGCTACGGGCCGGAGAGCCTTGCACTACGCGGCTGAAATGGGAAATTTGGTGATTTGCGAAAT...

CDS

1 records

下载 CDS FASTA

LOC131018946
ATGTCATTGTCAATATCCTTCTGCTTCTTGTATGATGAGCGAGAGGTGAAGGTTCCTACAAATCTCTCTGGTCTTGTCGACAGGTGCTCTGATTCGAAGGCTGCAGCTGAGGGAGACCCTAAACAACTCAGGGAGATCAGAAAGAAGTTTGAGGCAGTCAGAGACTTAAAGCAAATCTGCGATGTATACAGTGACTTCGCTACGGGCCGGAGAGCCTTGCACTACGCGGCTGAAATGGGAAATTTGGTGATTTGCGAAAT...

Protein

1 records

下载 Protein FASTA

XP_057803612.1
MSLSISFCFLYDEREVKVPTNLSGLVDRCSDSKAAAEGDPKQLREIRKKFEAVRDLKQICDVYSDFATGRRALHYAAEMGNLVICEILVDKFRAFVDIPSYSGDTPLLEAAKGEHVKVVEYLINHNALHQVPNKKGFTALHYAVLKGNKQLMEILLANGAPTEIDSVDGTPLQIAASLGNLKAVKLLLRNGATPSSDTSSIMGSPLISAIKARSFECVKCLLKAKANPEKCLYGLTPLSHAAKERDTRYLLSLLDAGAKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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