Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001581`

染色体: Chr01 坐标: 29825431-29831603 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001581`
名称	SmilChr01G001581
描述	uncharacterized SmilChr01G001581
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	29825431 - 29831603 / `+`

ID 对照

NCBI Gene ID	`LOC131018997`
GeneID	`131018997`
locus_tag	`-`
NCBI Name	`LOC131018997`
原始查询	`LOC131018997`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chromosome-partitioning protein, putative (DUF639) [Source:NCBI gene (formerly Entrezgene);Acc:843465]; symbol=AT1G71240; hit=AT1G71240; species=arabidopsis; confidence=high
产物	chromosome-partitioning protein, putative (DUF639) [Source:NCBI gene (formerly Entrezgene);Acc:843465]; symbol=AT1G71240; hit=AT1G71240; species=arabidopsis; confidence=high
Arabidopsis	`AT1G71240` (AT1G71240) chromosome-partitioning protein, putative (DUF639) [Source:NCBI gene (formerly Entrezgene);Acc:843465] identity=58; qcov=0.928; evalue=0; confidence=high
Rice	`Os01g0869000` (P0677H08.27-3) - identity=57; qcov=0.922; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF04842 (DUF639)
InterPro	-
eggNOG	-
NR	GeneID:131018997

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057803667.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057803667.1`
3	Chloroplast	叶绿体	0.20000	`XP_057803667.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057803667.1`
5	Nucleus	细胞核	0.00000	`XP_057803667.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:29825969`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B120,B95,C76
`Chr1:29829037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B117,B20,C17,C43
`Chr1:29829542`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:29829781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr1:29829805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B3,B86,C15
`Chr1:29829806`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B93
`Chr1:29829806`	`AT`	`A`	1bp_deletion	CDS_variant	1	B93
`Chr1:29830020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,C2
`Chr1:29830051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B103,C37,C38
`Chr1:29830191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr1:29830246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B47,D7
`Chr1:29830375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C25,C45,C74,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803667.1

826 aa

413

826

DUF639

PF04842 DUF639 578-807 aa

XP_057803672.1

825 aa

412

825

DUF639

PF04842 DUF639 577-806 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803667.1`	Pfam	`PF04842`	DUF639	Family	578	807	1.1e-78	264.6	Plant protein of unknown function (DUF639)
`XP_057803672.1`	Pfam	`PF04842`	DUF639	Family	577	806	1.1e-78	264.6	Plant protein of unknown function (DUF639)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057947684.1
GCACTAATTTTATTTTTCTAAAAAAAAATATCTAAACTTTTTACAAAATGGCCCTACGTTTTTGGTTGCTAATGCTACCAATCCTAGCGTAGCTTGCATTACTTCGCGAAGTAGCCTTTGTCTGCTTCCTCATTTTCCCTTTGCTTTTCTGGGACCGATTTAATCTGCTCTTTCTGCTAATTTGTCCTTGTTTAGCAATGTTTATCCTTTGGCCTATAATCTTGAATCAAGAATTTAAAGTAACGAATCTTGAAAGTTGA...

XM_057947689.1
GCACTAATTTTATTTTTCTAAAAAAAAATATCTAAACTTTTTACAAAATGGCCCTACGTTTTTGGTTGCTAATGCTACCAATCCTAGCGTAGCTTGCATTACTTCGCGAAGTAGCCTTTGTCTGCTTCCTCATTTTCCCTTTGCTTTTCTGGGACCGATTTAATCTGCTCTTTCTGCTAATTTGTCCTTGTTTAGCAATGTTTATCCTTTGGCCTATAATCTTGAATCAAGAATTTAAAGTAACGAATCTTGAAAGTTGA...

CDS

2 records

下载 CDS FASTA

LOC131018997
ATGCTCTCGAAAACACCCCACATAAGGCCAACCCCTAAATCTTCTGCAGCTTTTCATCATAAGCAGAATCCGTTTTTCAAGATTGCTTGCTGTGTGAAGAATGGTTCCTCGGATTCTCCGAATTCAGCACCTCCTTCTTCGACCCCGGATAACAAATTTGGGTTCAAGCTGGTGGGGCAGTCTCTTGGCGATATCAATCGGAAGTTCAATGATATTGATACAAATTCAATGCAAGAATCAGTAAACCAATGGCTATCAAA...

Protein

2 records

下载 Protein FASTA

XP_057803667.1
MLSKTPHIRPTPKSSAAFHHKQNPFFKIACCVKNGSSDSPNSAPPSSTPDNKFGFKLVGQSLGDINRKFNDIDTNSMQESVNQWLSKTQNFFNEVTSPLVKSVHDRKPSPQSDSEDMDDVFIIEPTIDSRTPGGELSEAAIVSIEQFSRMNGLTGQKMQKIFKALVPESVYNDPRYLVEYCCFRFLSRNNVEVHPSLKEPAFRRLIFITMLAWENPLRKGKGNRVKLFKGSNFQKKLVGEEAFVRIAPAVSGVADCPTAH...

XP_057803672.1
MLSKTPHIRPTPKSSAAFHHKQNPFFKIACCVKNGSSDSPNSAPPSSTPDNKFGFKLVGQSLGDINRKFNDIDTNSMQESVNQWLSKTQNFFNEVTSPLVKSVHDRKPSPQSDSEDMDDVFIIEPTIDSRTPGGELSEAAIVSIEQFSRMNGLTGQKMQKIFKALVPESVYNDPRYLVEYCCFRFLSRNNVEVHPSLKEPAFRRLIFITMLAWENPLRKGKGNRVKLFKGSNFQKLVGEEAFVRIAPAVSGVADCPTAHN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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