Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001634`

染色体: Chr01 坐标: 30392990-30397520 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001634`
名称	SmilChr01G001634
描述	uncharacterized SmilChr01G001634
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	30392990 - 30397520 / `-`

ID 对照

NCBI Gene ID	`LOC131019007`
GeneID	`131019007`
locus_tag	`-`
NCBI Name	`LOC131019007`
原始查询	`LOC131019007`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=low
产物	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=low
Arabidopsis	`AT1G31150` (AT1G31150) K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000] identity=25.9; qcov=0.394; evalue=3.89e-08; confidence=low
Rice	`-` -
GO	GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48); PF09331 (DUF1985); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131019007

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803679.1`
2	Chromosome	染色体	0.00000	`XP_057803679.1`
3	Centromere	着丝粒	0.00000	`XP_057803679.1`
4	Chromatin	染色质	0.00000	`XP_057803679.1`
5	Telomere	端粒	0.00000	`XP_057803679.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:30393233`	`G`	`A`	EMS_canonical_SNV	stop_gained	9	A22,B131,B29,B53,B98,C48,C61,C64,C66
`Chr1:30393264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,A19
`Chr1:30393277`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr1:30393334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B20,B21,B50,B84,C82
`Chr1:30393367`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B104
`Chr1:30393367`	`C`	`CA`	1bp_insertion	CDS_variant	1	B104
`Chr1:30393384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr1:30393410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B82,C62
`Chr1:30393413`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,C61
`Chr1:30393418`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B53
`Chr1:30393418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr1:30393434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803679.1

788 aa

394

788

DUF8566

DUF1985

Peptidase_C48

PF29561 DUF8566 26-206 aa PF09331 DUF1985 72-197 aa PF02902 Peptidase_C48 578-779 aa

XP_057803682.1

756 aa

378

756

DUF8566

DUF1985

Peptidase_C48

PF29561 DUF8566 26-206 aa PF09331 DUF1985 72-197 aa PF02902 Peptidase_C48 615-747 aa

XP_057803687.1

637 aa

318

637

DUF8566

DUF1985

PF29561 DUF8566 26-206 aa PF09331 DUF1985 72-197 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803679.1`	Pfam	`PF29561`	DUF8566	Domain	26	206	1.9e-09	38.4	Domain of unknown function (DUF8566)
`XP_057803679.1`	Pfam	`PF09331`	DUF1985	Family	72	197	1.6e-11	45.1	Domain of unknown function (DUF1985)
`XP_057803679.1`	Pfam	`PF02902`	Peptidase_C48	Domain	578	779	1.4e-12	48.7	Ulp1 protease family, C-terminal catalytic domain
`XP_057803682.1`	Pfam	`PF29561`	DUF8566	Domain	26	206	1.7e-09	38.5	Domain of unknown function (DUF8566)
`XP_057803682.1`	Pfam	`PF09331`	DUF1985	Family	72	197	1.5e-11	45.2	Domain of unknown function (DUF1985)
`XP_057803682.1`	Pfam	`PF02902`	Peptidase_C48	Domain	615	747	1.4e-11	45.4	Ulp1 protease family, C-terminal catalytic domain
`XP_057803687.1`	Pfam	`PF29561`	DUF8566	Domain	26	206	1.4e-09	38.8	Domain of unknown function (DUF8566)
`XP_057803687.1`	Pfam	`PF09331`	DUF1985	Family	72	197	1.3e-11	45.3	Domain of unknown function (DUF1985)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057947699.1
CGCTGTTCATTGAACGCTGCCGCTACGATTGCGACACGTCGCATCGATTAAAAACCCACCCAGCTCAGTTTTTGTGCAGCCCAGCCCGGTTTTCCTTGGACCGATTAATGCCGATTCAATTGAAACCCAATTGCCGGTTTTTCAAGTCTGAATTTTTGTTTTACTTTTGAAATATTTTGATATCTGTGCATGCAACAGAATTGTGACACGTCAACCTAGGAGTTTTAGAGTTGCTGTCGGAATCAAGCTTGTACACGTTT...

XM_057947696.1
CGCTGTTCATTGAACGCTGCCGCTACGATTGCGACACGTCGCATCGATTAAAAACCCACCCAGCTCAGTTTTTGTGCAGCCCAGCCCGGTTTTCCTTGGACCGATTAATGCCGATTCAATTGAAACCCAATTGCCGGTTTTTCAAGTCTGAATTTTTGTTTTACTTTTGAAATATTTTGATATCTGTGCATGCAACAGAATTGTGACACGTCAACCTAGGAGTTTTAGAGTTGCTGTCGGAATCAAGCTTGTACACGTTT...

CDS

3 records

下载 CDS FASTA

LOC131019007
ATGGAATTTTCAAGATGCAGACCCAATGTTGATTTGTTCACAATAGCTCGATTGTGGTATCTGGACGATATTAGAGAGCTATTATCAGTTGCAAACATGTCTCTTATGAGGAACTCTTGTTTTGGCCATTTATTCGACATAGGTCCTCTAAATTTTCAGGGAGAATTGTTAATGTTGTTGTGCAAGAGGCTACATTCTAATAGCTTAGATCTTAATACACTATTGTTTAAGTTTGGTGATCGCACTGTCGAATTTGGACG...

Protein

3 records

下载 Protein FASTA

XP_057803679.1
MEFSRCRPNVDLFTIARLWYLDDIRELLSVANMSLMRNSCFGHLFDIGPLNFQGELLMLLCKRLHSNSLDLNTLLFKFGDRTVEFGRSEFCLLTGLKFSGSFILPNESEFHSTAFASRSTVFFGEIETEFRNECAISGGNSARSLKLAYAFIIYGLFLMNNPHNGRVELGYMHILDDLDKFNDFPWGHVAYEYLVKSTHMLKRQLSTLAHESGNVTFEAYGFVFALKCWAYEVIPPLATVCAELNIEHLASFPRMRRWSA...

XP_057803682.1
MEFSRCRPNVDLFTIARLWYLDDIRELLSVANMSLMRNSCFGHLFDIGPLNFQGELLMLLCKRLHSNSLDLNTLLFKFGDRTVEFGRSEFCLLTGLKFSGSFILPNESEFHSTAFASRSTVFFGEIETEFRNECAISGGNSARSLKLAYAFIIYGLFLMNNPHNGRVELGYMHILDDLDKFNDFPWGHVAYEYLVKSTHMLKRQLSTLAHESGNVTFEAYGFVFALKCWAYEVIPPLATVCAELNIEHLASFPRMRRWSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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