Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001617

染色体: Chr01 坐标: 30283607-30286909 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001617
名称SmilChr01G001617
描述uncharacterized SmilChr01G001617
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向30283607 - 30286909 / -

ID 对照

NCBI Gene IDLOC131019049
GeneID131019049
locus_tag-
NCBI NameLOC131019049
原始查询LOC131019049

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述SET domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824824]; symbol=AT3G56570; hit=AT3G56570; species=arabidopsis; confidence=high
产物SET domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824824]; symbol=AT3G56570; hit=AT3G56570; species=arabidopsis; confidence=high
ArabidopsisAT3G56570 (AT3G56570)
SET domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824824]
identity=48.5; qcov=1.06; evalue=5.31e-158; confidence=high
RiceOs01g0879500
-
identity=46; qcov=1; evalue=7.63e-141; confidence=high
GOGO:0005634 (nucleus); GO:0016279 (protein-lysine N-methyltransferase activity); GO:0018026 (peptidyl-lysine monomethylation)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131019049

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057803716.1
2 Cytoplasm 细胞质 0.40000 XP_057803716.1
3 Chromosome 染色体 0.00000 XP_057803716.1
4 Centromere 着丝粒 0.00000 XP_057803716.1
5 Chromatin 染色质 0.00000 XP_057803716.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:30283827 C T EMS_canonical_SNV CDS_variant 4 A13,B29,B35,C48
Chr1:30283839 CT C 1bp_deletion frameshift_variant 4 B136,C11,C69,D11
Chr1:30283839 CT C 1bp_deletion CDS_variant 4 B136,C11,C69,D11
Chr1:30284024 C T EMS_canonical_SNV CDS_variant 1 B82
Chr1:30284039 C T EMS_canonical_SNV CDS_variant 1 D9
Chr1:30284082 G A EMS_canonical_SNV CDS_variant 4 A13,B29,B35,C48
Chr1:30284123 G A EMS_canonical_SNV CDS_variant 1 C2
Chr1:30284163 C T EMS_canonical_SNV CDS_variant 1 C5
Chr1:30284226 C T EMS_canonical_SNV CDS_variant 4 A13,B29,B35,C48
Chr1:30284404 G A EMS_canonical_SNV CDS_variant 2 C25,C74
Chr1:30284655 C T EMS_canonical_SNV CDS_variant 1 B139
Chr1:30284741 G A EMS_canonical_SNV CDS_variant 3 B13,B56,B96

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057947733.1
AAAAATTTATTAATATATTAAATCTTTAAAATTATTAGGCTATACCAACAGGTCCAACACGCCGCCGCCAAGCTAAACTCTCACACTCTCACACGCCTCTCCTCATCGCCTGAGCGCAATGGCCGCCGCCAGAAAGATGAGAGCATTTAAACGGTGGATGAAGGATCAAGGCATTGAGTGGAGCGACGCCCTTCTCTTCGCAACCGCCACCGACTCCTCGCAATCGCCGCCAATCTCCGTGGAGGCTTTGAGCGATTTGA...

CDS

1 records

下载 CDS FASTA
LOC131019049
ATGGCCGCCGCCAGAAAGATGAGAGCATTTAAACGGTGGATGAAGGATCAAGGCATTGAGTGGAGCGACGCCCTTCTCTTCGCAACCGCCACCGACTCCTCGCAATCGCCGCCAATCTCCGTGGAGGCTTTGAGCGATTTGAAGGAGGGCGACGTCGTGGCGAAGATCCCTAAGCACAGCTGCCTCACCGTCAGGACTTCCGCCGCCAGCGAACTCATCGAGGAGGCGGAGCTCGGCGGCAATTTGGGCCTCTGCTTTGC...

Protein

1 records

下载 Protein FASTA
XP_057803716.1
MAAARKMRAFKRWMKDQGIEWSDALLFATATDSSQSPPISVEALSDLKEGDVVAKIPKHSCLTVRTSAASELIEEAELGGNLGLCFALMYEKILGAESKWFEYLKMLPTFEPIPLLWSLSEIDSLLAGTELHKTVKEDKALVYEDWKECIQPVFDLESFKLNPELFTVDEYFAAKSLVASRAFQVDEYHGYGMVPLADLFNHKTAAEDVHITTESDNDTDTEKEGTESTDHENDGDHEPVTHDSHSEGGCLSGSDLELSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器