当前解析结果
SmilChr01G000528| 统一新 Gene ID | SmilChr01G000528 |
|---|---|
| 名称 | SmilChr01G000528 |
| 描述 | uncharacterized SmilChr01G000528 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 10749573 - 10851771 / + |
| NCBI Gene ID | LOC131019092 |
|---|---|
| GeneID | 131019092 |
| locus_tag | - |
| NCBI Name | LOC131019092 |
| 原始查询 | LOC131019092 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=39.1; qcov=0.081; evalue=2.61e-22; confidence=weak |
| Rice | Os04g0191000- identity=29.2; qcov=0.442; evalue=1.84e-69; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019092 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057803790.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057803790.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803790.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803790.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803790.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:10749657 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A11 |
Chr1:10749657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr1:10749675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,C74 |
Chr1:10749686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:10749789 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C32,C68 |
Chr1:10749809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr1:10749858 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C83 |
Chr1:10749858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:10749936 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B47,B64 |
Chr1:10749983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr1:10750041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C20,C79 |
Chr1:10750093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B37,B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803790.1PF17919
RT_RNaseH_2 629-727 aa
PF17917
RT_RNaseH 656-757 aa
PF00665
rve 892-985 aa
PF00078
RVT_1 1112-1226 aa
PF17919
RT_RNaseH_2 1290-1349 aa
PF00078
RVT_1 1353-1462 aa
PF17919
RT_RNaseH_2 1527-1624 aa
PF17917
RT_RNaseH 1551-1639 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803790.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 629 | 727 | 2.4e-75 | 249.6 | RNase H-like domain found in reverse transcriptase |
XP_057803790.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 656 | 757 | 4.3e-73 | 242.9 | RNase H-like domain found in reverse transcriptase |
XP_057803790.1 |
Pfam | PF00665 |
rve | Domain | 892 | 985 | 3.1e-17 | 63.4 | Integrase core domain |
XP_057803790.1 |
Pfam | PF00078 |
RVT_1 | Domain | 1112 | 1226 | 1.6e-57 | 195.3 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803790.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 1290 | 1349 | 2.4e-75 | 249.6 | RNase H-like domain found in reverse transcriptase |
XP_057803790.1 |
Pfam | PF00078 |
RVT_1 | Domain | 1353 | 1462 | 1.6e-57 | 195.3 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803790.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 1527 | 1624 | 2.4e-75 | 249.6 | RNase H-like domain found in reverse transcriptase |
XP_057803790.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 1551 | 1639 | 4.3e-73 | 242.9 | RNase H-like domain found in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。