当前解析结果
SmilChr03G004321| 统一新 Gene ID | SmilChr03G004321 |
|---|---|
| 名称 | SmilChr03G004321 |
| 描述 | uncharacterized SmilChr03G004321 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61575799 - 61578909 / - |
| NCBI Gene ID | LOC131019098 |
|---|---|
| GeneID | 131019098 |
| locus_tag | - |
| NCBI Name | LOC131019098 |
| 原始查询 | LOC131019098 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNase P Rpr2/Rpp21 subunit domain protein [Source:NCBI gene (formerly Entrezgene);Acc:834128]; symbol=AT5G41270; hit=AT5G41270; species=arabidopsis; confidence=low |
| 产物 | RNase P Rpr2/Rpp21 subunit domain protein [Source:NCBI gene (formerly Entrezgene);Acc:834128]; symbol=AT5G41270; hit=AT5G41270; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G41270 (AT5G41270)RNase P Rpr2/Rpp21 subunit domain protein [Source:NCBI gene (formerly Entrezgene);Acc:834128] identity=33; qcov=0.822; evalue=5.51e-17; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019098 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803764.1 |
| 2 | Nucleolus | 核仁 | 0.40000 | XP_057803764.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057803764.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803764.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803764.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61575851 |
TA |
T |
1bp_deletion | frameshift_variant | 16 | A3,B103,B107,B121,B19,B30,B54,B62,C25,C36,C5,C52,C61,C85,C9,D7 |
Chr3:61575888 |
CTG |
C |
2bp_deletion | frameshift_variant | 38 | A1,A10,A11,A16,B10,B102,B121,B127,B139,B17,B21,B32,B58,B62,B73,B76,B81,C10,C18,C20,C25,C28,C41,C45,C5,C52,C53,C56,C66,C72,C73,C74,C75,C76,C77,C80,C9,D6 |
Chr3:61575915 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,C5,C53,C77 |
Chr3:61575934 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B133,B15 |
Chr3:61575934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,B15 |
Chr3:61575973 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B54,B62,C5 |
Chr3:61575979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr3:61576003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr3:61576034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr3:61576076 |
GT |
G |
1bp_deletion | frameshift_variant | 6 | A10,A8,B118,B135,C58,C8 |
Chr3:61576114 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B3,C27,C53 |
Chr3:61576114 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B3,C27,C53 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。