Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004361`

染色体: Chr03 坐标: 61844170-61845864 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004361`
名称	SmilChr03G004361
描述	receptor-like protein 12
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61844170 - 61845864 / `+`

ID 对照

NCBI Gene ID	`LOC131019109`
GeneID	`131019109`
locus_tag	`-`
NCBI Name	`LOC131019109`
原始查询	`LOC131019109`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 12
产物	receptor-like protein 12
Arabidopsis	`AT1G71400` (RLP12) receptor like protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:843481] identity=37.6; qcov=0.933; evalue=2.08e-82; confidence=medium
Rice	`Os12g0215950` - identity=36.7; qcov=1.03; evalue=8.52e-74; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131019109

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803774.1`
2	Nucleus	细胞核	0.00000	`XP_057803774.1`
3	Chromosome	染色体	0.00000	`XP_057803774.1`
4	Centromere	着丝粒	0.00000	`XP_057803774.1`
5	Chromatin	染色质	0.00000	`XP_057803774.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61844213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B98,C28,C52
`Chr3:61844228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B98,C28
`Chr3:61844366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr3:61844371`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,B139,B50,C54
`Chr3:61844376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr3:61844379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr3:61844381`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr3:61844382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr3:61844393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C55
`Chr3:61844429`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B4,C43
`Chr3:61844430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B81,B83
`Chr3:61844447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B118,B139,B27,B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803774.1

538 aa

269

538

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

PF13855 LRR_8 59-118 aa PF13855 LRR_8 83-143 aa PF00560 LRR_1 84-106 aa PF00560 LRR_1 108-130 aa PF00560 LRR_1 160-182 aa PF13855 LRR_8 209-268 aa PF00560 LRR_1 211-231 aa PF00560 LRR_1 234-255 aa PF00560 LRR_1 257-278 aa PF00560 LRR_1 306-327 aa PF00560 LRR_1 354-376 aa PF00560 LRR_1 378-395 aa PF00560 LRR_1 398-420 aa PF00560 LRR_1 423-444 aa PF00560 LRR_1 447-466 aa PF00560 LRR_1 472-493 aa PF13855 LRR_8 472-530 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803774.1`	Pfam	`PF13855`	LRR_8	Repeat	59	118	5.9e-37	126.0	Leucine rich repeat
`XP_057803774.1`	Pfam	`PF13855`	LRR_8	Repeat	83	143	5.9e-37	126.0	Leucine rich repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	84	106	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	108	130	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	160	182	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF13855`	LRR_8	Repeat	209	268	5.9e-37	126.0	Leucine rich repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	211	231	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	234	255	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	257	278	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	306	327	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	354	376	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	378	395	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	398	420	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	423	444	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	447	466	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF00560`	LRR_1	Repeat	472	493	5.8e-47	148.2	Leucine Rich Repeat
`XP_057803774.1`	Pfam	`PF13855`	LRR_8	Repeat	472	530	5.9e-37	126.0	Leucine rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947791.1
ATGTCTTCTGTGCAAAACATAAATCTAGGGCGCAACAAATTCACGGGGAACCTTTCAAGGGATGTCGGGAATATTACCATGCTAACAGAGTTACAACTCCAGGAAAACCATTTAACAGCATTAGACTTGAACAGCTTGAGTGGTTCAATTCCACATGAGCTCTTTAACGTTTCAACTCTTCGGATTCTTTCACTTGTCGGCAATGCTCTGTTAGGGGTTCTTCCAACCCATTTATGCCATGCCTCTCCCTCTCTCGAAGA...

CDS

1 records

下载 CDS FASTA

LOC131019109
ATGTCTTCTGTGCAAAACATAAATCTAGGGCGCAACAAATTCACGGGGAACCTTTCAAGGGATGTCGGGAATATTACCATGCTAACAGAGTTACAACTCCAGGAAAACCATTTAACAGCATTAGACTTGAACAGCTTGAGTGGTTCAATTCCACATGAGCTCTTTAACGTTTCAACTCTTCGGATTCTTTCACTTGTCGGCAATGCTCTGTTAGGGGTTCTTCCAACCCATTTATGCCATGCCTCTCCCTCTCTCGAAGA...

Protein

1 records

下载 Protein FASTA

XP_057803774.1
MSSVQNINLGRNKFTGNLSRDVGNITMLTELQLQENHLTALDLNSLSGSIPHELFNVSTLRILSLVGNALLGVLPTHLCHASPSLEELYLGNNSISGAIPNSISNCSQLTILSLSVNKFSGYIPTHLGNLRLLQLLELNNNNLTQPPSSSFITSLTNCKSLTHLSFGDNPLNGVIPASAGNLSSSLSIFYAKNCKFSGSIPVEIGNLSNMMVLDLSGNELSGNIPLTISHLHELQGLNLSHNKLGGSIPHAICDLFSLDT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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