Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004477`

染色体: Chr03 坐标: 62874604-62878200 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004477`
名称	SmilChr03G004477
描述	LRR receptor-like serine/threonine-protein kinase EFR
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62874604 - 62878200 / `-`

ID 对照

NCBI Gene ID	`LOC131019147`
GeneID	`131019147`
locus_tag	`-`
NCBI Name	`LOC131019147`
原始查询	`LOC131019147`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase EFR
产物	LRR receptor-like serine/threonine-protein kinase EFR
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=39.3; qcov=1.03; evalue=0; confidence=medium
Rice	`Os07g0121200` - identity=40.4; qcov=1.03; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131019147

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803816.1`
2	Nucleus	细胞核	0.00000	`XP_057803816.1`
3	Chromosome	染色体	0.00000	`XP_057803816.1`
4	Centromere	着丝粒	0.00000	`XP_057803816.1`
5	Chromatin	染色质	0.00000	`XP_057803816.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62875204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B39
`Chr3:62875237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr3:62875254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B19,B40
`Chr3:62875262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,B119,B60,C27,C62
`Chr3:62875287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:62875301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B134,B30
`Chr3:62875329`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B39,B50,C17,C4,C77
`Chr3:62875332`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B30,B56,C21
`Chr3:62875348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B9,C34,C67
`Chr3:62875371`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B121,B127,B4,C11
`Chr3:62875372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,B137,B89
`Chr3:62875375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803816.1

865 aa

432

865

LRR_14

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF23598 LRR_14 3-129 aa PF00560 LRR_1 8-29 aa PF00560 LRR_1 32-53 aa PF00560 LRR_1 55-77 aa PF00560 LRR_1 98-119 aa PF00560 LRR_1 148-169 aa PF13855 LRR_8 148-206 aa PF00560 LRR_1 171-192 aa PF00560 LRR_1 223-245 aa PF00560 LRR_1 297-317 aa PF00560 LRR_1 320-341 aa PF00560 LRR_1 369-390 aa PF00560 LRR_1 416-438 aa PF00560 LRR_1 440-462 aa PF00069 Pkinase 584-852 aa PF07714 PK_Tyr_Ser-Thr 587-856 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803816.1`	Pfam	`PF23598`	LRR_14	Repeat	3	129	3.8e-33	115.4	Leucine-rich repeat region
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	8	29	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	32	53	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	55	77	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	98	119	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	148	169	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF13855`	LRR_8	Repeat	148	206	1.1e-32	112.3	Leucine rich repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	171	192	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	223	245	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	297	317	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	320	341	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	369	390	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	416	438	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00560`	LRR_1	Repeat	440	462	1.7e-42	134.9	Leucine Rich Repeat
`XP_057803816.1`	Pfam	`PF00069`	Pkinase	Domain	584	852	4.8e-38	131.8	Protein kinase domain
`XP_057803816.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	587	856	5.5e-38	131.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947833.1
ATGTGCAGTAATCTTCCATTTCTTACTATGCTTGGTCTTTCTGGCAATCAGCTGAGTGGCGCGATTCCCACAAATCTATCCCAATGTTCAGGGCTTGAGTTGTTGGGCCTCTCTTACAACTCTTTTAGTGGGGAGATACCTTCAGAAATCGGCTACTTAACATCTCTTCAGATTCTATATCTTGGTGGTAACAATTTGAATGGAATACTACCACATGAGATTGGCCATCTTCAGAGTTTGGTTGAGTTCGGTGCTGAAGG...

CDS

1 records

下载 CDS FASTA

LOC131019147
ATGTGCAGTAATCTTCCATTTCTTACTATGCTTGGTCTTTCTGGCAATCAGCTGAGTGGCGCGATTCCCACAAATCTATCCCAATGTTCAGGGCTTGAGTTGTTGGGCCTCTCTTACAACTCTTTTAGTGGGGAGATACCTTCAGAAATCGGCTACTTAACATCTCTTCAGATTCTATATCTTGGTGGTAACAATTTGAATGGAATACTACCACATGAGATTGGCCATCTTCAGAGTTTGGTTGAGTTCGGTGCTGAAGG...

Protein

1 records

下载 Protein FASTA

XP_057803816.1
MCSNLPFLTMLGLSGNQLSGAIPTNLSQCSGLELLGLSYNSFSGEIPSEIGYLTSLQILYLGGNNLNGILPHEIGHLQSLVEFGAEGLIPTEFGQLYHLERLSLSFTSLSGSIPHELFNISTLRILGLNDNALSGVLPTHLCHASPFLEELYLANNSITGAIPNSISNCSQLTILSLSENKFSGYIPTHLGNPRHLQLLQLNSNNLTQAPSSSFITSLTNCKSLTILSIGDNPLNGVIPASVGNLSSSLRIFIANNCKFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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