Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004491`

染色体: Chr03 坐标: 63027925-63030323 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004491`
名称	SmilChr03G004491
描述	LRR receptor-like serine/threonine-protein kinase GSO1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63027925 - 63030323 / `-`

ID 对照

NCBI Gene ID	`LOC131019154`
GeneID	`131019154`
locus_tag	`-`
NCBI Name	`LOC131019154`
原始查询	`LOC131019154`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase GSO1
产物	LRR receptor-like serine/threonine-protein kinase GSO1
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=38.9; qcov=0.886; evalue=8.33e-117; confidence=medium
Rice	`Os06g0588800` - identity=38; qcov=0.985; evalue=5.98e-112; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131019154

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803823.1`
2	Nucleus	细胞核	0.00000	`XP_057803823.1`
3	Chromosome	染色体	0.00000	`XP_057803823.1`
4	Centromere	着丝粒	0.00000	`XP_057803823.1`
5	Chromatin	染色质	0.00000	`XP_057803823.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63027958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,B83
`Chr3:63027967`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr3:63027979`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B128,B139,B17,C5
`Chr3:63028014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr3:63028056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr3:63028094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C40,C59
`Chr3:63028246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:63028256`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:63028260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr3:63028294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C82
`Chr3:63028316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,B65
`Chr3:63028350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803823.1

719 aa

360

719

LRRNT_2

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 34-68 aa PF00560 LRR_1 93-112 aa PF00560 LRR_1 140-162 aa PF13855 LRR_8 140-199 aa PF00560 LRR_1 164-186 aa PF00560 LRR_1 238-259 aa PF00560 LRR_1 262-283 aa PF00560 LRR_1 285-307 aa PF13855 LRR_8 406-464 aa PF00560 LRR_1 481-503 aa PF00560 LRR_1 534-552 aa PF00560 LRR_1 555-576 aa PF00560 LRR_1 578-599 aa PF00560 LRR_1 602-624 aa PF00560 LRR_1 627-648 aa PF00560 LRR_1 674-696 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803823.1`	Pfam	`PF08263`	LRRNT_2	Family	34	68	8e-05	23.5	Leucine rich repeat N-terminal domain
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	93	112	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	140	162	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF13855`	LRR_8	Repeat	140	199	3.3e-46	155.6	Leucine rich repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	164	186	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	238	259	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	262	283	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	285	307	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF13855`	LRR_8	Repeat	406	464	3.3e-46	155.6	Leucine rich repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	481	503	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	534	552	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	555	576	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	578	599	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	602	624	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	627	648	5.4e-56	175.1	Leucine Rich Repeat
`XP_057803823.1`	Pfam	`PF00560`	LRR_1	Repeat	674	696	5.4e-56	175.1	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947840.1
ATGGAGATAAAGCTTTATTGCATTTTGCTGTATGCATTCCTAATAACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTTCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCAGCCTTGAATCTCTCCGCCACCATTCCACCACAGCT...

CDS

1 records

下载 CDS FASTA

LOC131019154
ATGGAGATAAAGCTTTATTGCATTTTGCTGTATGCATTCCTAATAACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTTCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCAGCCTTGAATCTCTCCGCCACCATTCCACCACAGCT...

Protein

1 records

下载 Protein FASTA

XP_057803823.1
MEIKLYCILLYAFLITITFPMLSSEAKQPLSLATDQTSLLSLKHTSLLLATNWTNSTSVCTWIGVTCSFRHHRVAALNLSATIPPQLGHLSFLVSLDLSNNHFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLSKLEYLSLRNNSFIGSIPKSLSNLTNLQYLSLSSNSLSGEIPKEFGRLQSLQTLSIQSNHLYGAIPSAIFNISTLVSMAFTYNELSGSLPTDMCRNLPFLTKIYLSDNQLSGAIPTNLSQCL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器