当前解析结果
SmilChr03G004497| 统一新 Gene ID | SmilChr03G004497 |
|---|---|
| 名称 | SmilChr03G004497 |
| 描述 | pectin acetylesterase 8-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63087727 - 63089470 / + |
| NCBI Gene ID | LOC131019159 |
|---|---|
| GeneID | 131019159 |
| locus_tag | - |
| NCBI Name | LOC131019159 |
| 原始查询 | LOC131019159 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pectin acetylesterase 8-like |
| 产物 | pectin acetylesterase 8-like |
| Arabidopsis | AT2G46930 (AT2G46930)Pectinacetylesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819307] identity=39.9; qcov=0.953; evalue=2.86e-72; confidence=medium |
| Rice | Os02g0702400- identity=40.2; qcov=0.953; evalue=1.49e-69; confidence=medium |
| GO | GO:0009505 (plant-type cell wall); GO:0052793 (pectin acetylesterase activity); GO:0071555 (cell wall organization) |
| KEGG | - |
| Pfam | PF03283 (PAE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019159 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057803828.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803828.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803828.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803828.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803828.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63087750 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | B134,B62,B80,C41,C54,C62,D9 |
Chr3:63087936 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B39,C4,C72 |
Chr3:63087955 |
GGT |
G |
2bp_deletion | frameshift_variant | 14 | A19,A8,B1,B119,B59,B67,B68,C40,C43,C44,C76,C8,C84,D11 |
Chr3:63088099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr3:63088147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,C18,C53 |
Chr3:63088165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,C18,C53 |
Chr3:63088207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr3:63088208 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B129,B24 |
Chr3:63088208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B24 |
Chr3:63088367 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,B75 |
Chr3:63088930 |
AT |
A |
1bp_deletion | frameshift_variant | 7 | A6,A8,B130,B84,C22,C41,C44 |
Chr3:63088989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A8,B62,B76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803828.1PF03283
PAE 4-269 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803828.1 |
Pfam | PF03283 |
PAE | Family | 4 | 269 | 5.3e-83 | 279.8 | Pectinacetylesterase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。