Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004500`

染色体: Chr03 坐标: 63120016-63122618 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004500`
名称	SmilChr03G004500
描述	LRR receptor-like serine/threonine-protein kinase EFR
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63120016 - 63122618 / `-`

ID 对照

NCBI Gene ID	`LOC131019163`
GeneID	`131019163`
locus_tag	`-`
NCBI Name	`LOC131019163`
原始查询	`LOC131019163`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase EFR
产物	LRR receptor-like serine/threonine-protein kinase EFR
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=39.5; qcov=0.964; evalue=2.45e-156; confidence=medium
Rice	`Os01g0153000` - identity=38.3; qcov=0.985; evalue=2.63e-161; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131019163

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803831.1`
2	Nucleus	细胞核	0.00000	`XP_057803831.1`
3	Chromosome	染色体	0.00000	`XP_057803831.1`
4	Centromere	着丝粒	0.00000	`XP_057803831.1`
5	Chromatin	染色质	0.00000	`XP_057803831.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63120019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,C73
`Chr3:63120021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,B3,B98,C70,D9
`Chr3:63120041`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C54
`Chr3:63120041`	`CT`	`C`	1bp_deletion	CDS_variant	1	C54
`Chr3:63120106`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr3:63120111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr3:63120295`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:63120297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr3:63120298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:63120478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,C31
`Chr3:63120523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr3:63120526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803831.1

798 aa

399

798

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 68-89 aa PF13855 LRR_8 68-126 aa PF00560 LRR_1 91-112 aa PF13855 LRR_8 139-199 aa PF00560 LRR_1 140-161 aa PF00560 LRR_1 216-238 aa PF00560 LRR_1 290-311 aa PF00560 LRR_1 314-334 aa PF00560 LRR_1 362-383 aa PF00560 LRR_1 388-407 aa PF00560 LRR_1 409-431 aa PF00560 LRR_1 433-455 aa PF00069 Pkinase 577-747 aa PF07714 PK_Tyr_Ser-Thr 580-729 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	68	89	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF13855`	LRR_8	Repeat	68	126	3.3e-35	120.4	Leucine rich repeat
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	91	112	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF13855`	LRR_8	Repeat	139	199	3.3e-35	120.4	Leucine rich repeat
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	140	161	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	216	238	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	290	311	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	314	334	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	362	383	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	388	407	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	409	431	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF00560`	LRR_1	Repeat	433	455	6.4e-41	130.2	Leucine Rich Repeat
`XP_057803831.1`	Pfam	`PF00069`	Pkinase	Domain	577	747	7.6e-30	104.9	Protein kinase domain
`XP_057803831.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	580	729	1.1e-26	94.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947848.1
TACCTTCAGAAATCGGCTACTTAACATCTCTTCGGGAGTTATATGTTGGTGGTAACAATTTGAATGGTATGGTTCAAGTTCTTATCACATAAATTTGTGTAAATAAGATTTTATTAGTTTCATGACACTTTTTTTGCCAGGAATACTACCACATGAGATTGGCCATCTTCAGAGTCTGGTTACGTTTGGTGCTGAACGAAATGAGATTGCGGGCTCAATTGATTTCAATATTTTCATGAATATGTCTTCTCTGCAAAACA...

CDS

1 records

下载 CDS FASTA

LOC131019163
ATGACACTTTTTTTGCCAGGAATACTACCACATGAGATTGGCCATCTTCAGAGTCTGGTTACGTTTGGTGCTGAACGAAATGAGATTGCGGGCTCAATTGATTTCAATATTTTCATGAATATGTCTTCTCTGCAAAACATAAATCTAGGGCGCAACAAATTCACGGGGAACCTTTCAAGGGATGTCGGGAATATTACCATGCTAGCATATTTGGATCTCTCGGAAAGCCATTTTACAGGGCTTATTCCCACTGAATTTGG...

Protein

1 records

下载 Protein FASTA

XP_057803831.1
MTLFLPGILPHEIGHLQSLVTFGAERNEIAGSIDFNIFMNMSSLQNINLGRNKFTGNLSRDVGNITMLAYLDLSESHFTGLIPTEFGQLYHLETLQLNFNSLSGSIPHELFNISTLRILSLTANALSGVLPTHLCHASPSLEEVYLGGNSITGAIPNSISNYSQLTILALHVNKLSGYIPTHLGNLKNLQRLTLFSNNLTQAPSSSFITSLTNCKSLTTLSIADNPLNGVIPASFGNLSSTLQTFTAGNCKFSGIIPVEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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