当前解析结果
SmilChr03G004501| 统一新 Gene ID | SmilChr03G004501 |
|---|---|
| 名称 | SmilChr03G004501 |
| 描述 | receptor-like protein 35 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63122527 - 63123471 / - |
| NCBI Gene ID | LOC131019164 |
|---|---|
| GeneID | 131019164 |
| locus_tag | - |
| NCBI Name | LOC131019164 |
| 原始查询 | LOC131019164 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 35 |
| 产物 | receptor-like protein 35 |
| Arabidopsis | AT3G47110 (AT3G47110)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823864] identity=34.5; qcov=1.01; evalue=1.72e-47; confidence=low |
| Rice | Os11g0559200 (Xa21*)- identity=45.3; qcov=0.85; evalue=2.21e-60; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019164 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803833.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803833.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803833.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803833.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803833.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63122531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B25,B75,C79 |
Chr3:63122533 |
G |
GGC |
2bp_insertion | frameshift_variant | 2 | B120,D4 |
Chr3:63122533 |
G |
GGC |
2bp_insertion | CDS_variant | 2 | B120,D4 |
Chr3:63122534 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B120,D4 |
Chr3:63122534 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B120,D4 |
Chr3:63122537 |
A |
AG |
1bp_insertion | frameshift_variant | 5 | A20,B12,B55,B63,C11 |
Chr3:63122537 |
A |
AG |
1bp_insertion | CDS_variant | 5 | A20,B12,B55,B63,C11 |
Chr3:63122538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B120,C10,C8,C85 |
Chr3:63122547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr3:63122548 |
C |
CAT |
2bp_insertion | frameshift_variant | 4 | B107,B38,C30,C68 |
Chr3:63122548 |
C |
CAT |
2bp_insertion | CDS_variant | 4 | B107,B38,C30,C68 |
Chr3:63122563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B79,C30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803833.1PF08263
LRRNT_2 36-71 aa
PF13855
LRR_8 147-207 aa
PF00560
LRR_1 148-170 aa
PF00560
LRR_1 172-194 aa
PF00560
LRR_1 196-217 aa
PF00560
LRR_1 245-267 aa
PF00560
LRR_1 274-292 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803833.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 36 | 71 | 8.9e-06 | 26.6 | Leucine rich repeat N-terminal domain |
XP_057803833.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 147 | 207 | 1.3e-19 | 70.4 | Leucine rich repeat |
XP_057803833.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 148 | 170 | 6e-28 | 91.6 | Leucine Rich Repeat |
XP_057803833.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 172 | 194 | 6e-28 | 91.6 | Leucine Rich Repeat |
XP_057803833.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 196 | 217 | 6e-28 | 91.6 | Leucine Rich Repeat |
XP_057803833.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 245 | 267 | 6e-28 | 91.6 | Leucine Rich Repeat |
XP_057803833.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 274 | 292 | 6e-28 | 91.6 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。