当前解析结果
SmilChr03G004510| 统一新 Gene ID | SmilChr03G004510 |
|---|---|
| 名称 | SmilChr03G004510 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At4g36180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63181034 - 63181606 / - |
| NCBI Gene ID | LOC131019167 |
|---|---|
| GeneID | 131019167 |
| locus_tag | - |
| NCBI Name | LOC131019167 |
| 原始查询 | LOC131019167 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At4g36180 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At4g36180 |
| Arabidopsis | AT4G28650 (AT4G28650)Leucine-rich repeat transmembrane protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828983] identity=45.5; qcov=0.695; evalue=1.68e-27; confidence=medium |
| Rice | Os11g0490200- identity=43.5; qcov=0.895; evalue=2.39e-33; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019167 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803836.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057803836.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803836.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803836.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803836.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63181056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,A24,B115,B91,C61 |
Chr3:63181106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,B28,C30 |
Chr3:63181129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr3:63181131 |
C |
CTT |
2bp_insertion | frameshift_variant | 15 | A16,A8,B11,B124,B28,B42,B43,B63,B69,B9,C24,C40,C5,C76,D7 |
Chr3:63181183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr3:63181185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr3:63181190 |
T |
TG |
1bp_insertion | frameshift_variant | 18 | B103,B139,B20,B36,B45,B71,B80,B85,C26,C28,C29,C31,C35,C38,C42,C6,C60,C87 |
Chr3:63181219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B119,B122,B4,C22,C27 |
Chr3:63181249 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A16,A8,B112,B24,B43,B63,C76,D7 |
Chr3:63181291 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A23,B33,C29,C35 |
Chr3:63181291 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B33,C29,C35 |
Chr3:63181292 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B24,B63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803836.1PF00560
LRR_1 76-95 aa
PF13855
LRR_8 117-158 aa
PF13855
LRR_8 122-182 aa
PF00560
LRR_1 123-145 aa
PF00560
LRR_1 147-169 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803836.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 76 | 95 | 1.6e-17 | 60.5 | Leucine Rich Repeat |
XP_057803836.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 117 | 158 | 2.4e-15 | 56.8 | Leucine rich repeat |
XP_057803836.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 122 | 182 | 2.4e-15 | 56.8 | Leucine rich repeat |
XP_057803836.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 123 | 145 | 1.6e-17 | 60.5 | Leucine Rich Repeat |
XP_057803836.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 169 | 1.6e-17 | 60.5 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。