Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004657`

染色体: Chr03 坐标: 64065127-64066056 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004657`
名称	SmilChr03G004657
描述	uncharacterized SmilChr03G004657
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64065127 - 64066056 / `+`

ID 对照

NCBI Gene ID	`LOC131019176`
GeneID	`131019176`
locus_tag	`-`
NCBI Name	`LOC131019176`
原始查询	`LOC131019176`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low
产物	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low
Arabidopsis	`AT3G59120` (AT3G59120) Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081] identity=30.4; qcov=0.99; evalue=3.69e-21; confidence=low
Rice	`Os07g0610200` - identity=27.8; qcov=0.722; evalue=8.16e-09; confidence=low
GO	-
KEGG	-
Pfam	PF03107 (C1_2)
InterPro	-
eggNOG	-
NR	GeneID:131019176

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.40000	`XP_057803845.1`
2	Cytoplasm	细胞质	0.40000	`XP_057803845.1`
3	Vacuole	液泡	0.20000	`XP_057803845.1`
4	Chromosome	染色体	0.00000	`XP_057803845.1`
5	Centromere	着丝粒	0.00000	`XP_057803845.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64065169`	`GA`	`G`	1bp_deletion	frameshift_variant	1	D1
`Chr3:64065169`	`GA`	`G`	1bp_deletion	CDS_variant	1	D1
`Chr3:64065195`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr3:64065245`	`T`	`TCG`	2bp_insertion	frameshift_variant	1	C77
`Chr3:64065245`	`T`	`TCG`	2bp_insertion	CDS_variant	1	C77
`Chr3:64065248`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr3:64065262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:64065407`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr3:64065434`	`A`	`ATG`	2bp_insertion	frameshift_variant	1	B66
`Chr3:64065434`	`A`	`ATG`	2bp_insertion	CDS_variant	1	B66
`Chr3:64065441`	`GA`	`G`	1bp_deletion	frameshift_variant	3	B72,C24,C82
`Chr3:64065441`	`GA`	`G`	1bp_deletion	CDS_variant	3	B72,C24,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803845.1

299 aa

150

299

C1_2

PF03107 C1_2 23-68 aa PF03107 C1_2 172-218 aa PF03107 C1_2 228-278 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803845.1`	Pfam	`PF03107`	C1_2	Domain	23	68	1.6e-28	99.5	C1 domain
`XP_057803845.1`	Pfam	`PF03107`	C1_2	Domain	172	218	1.6e-28	99.5	C1 domain
`XP_057803845.1`	Pfam	`PF03107`	C1_2	Domain	228	278	1.6e-28	99.5	C1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947862.1
AAGGAAAAAAATCACACACACACACATACAATGAGTGGGAAAGAAAAATATAAGATAGAGGAAGAGGAGGAGGAGACAAAGGTTGTTCATCATTGGAGCCACGAGCATCGACTTACTCTGGGAAAACCTCGTATAGGAGAAAGATGTTATGGTTGTGGAAGGTCTTTTAATAGAGGAGAGAAAGCTTATGAATGTAGATTATGTTGGGAGAATATCATATTAGATGAAGAATGTTTGGGAATGCCGAGGAAGATCAGACA...

CDS

1 records

下载 CDS FASTA

LOC131019176
ATGAGTGGGAAAGAAAAATATAAGATAGAGGAAGAGGAGGAGGAGACAAAGGTTGTTCATCATTGGAGCCACGAGCATCGACTTACTCTGGGAAAACCTCGTATAGGAGAAAGATGTTATGGTTGTGGAAGGTCTTTTAATAGAGGAGAGAAAGCTTATGAATGTAGATTATGTTGGGAGAATATCATATTAGATGAAGAATGTTTGGGAATGCCGAGGAAGATCAGACACGAAATGCACCCACAACACACACTTACTCA...

Protein

1 records

下载 Protein FASTA

XP_057803845.1
MSGKEKYKIEEEEEETKVVHHWSHEHRLTLGKPRIGERCYGCGRSFNRGEKAYECRLCWENIILDEECLGMPRKIRHEMHPQHTLTQHVFTSDQMIIHGETLKGKLCAICERIIIIRKRPYTNTEEGGILYKCTRAECELWMHMRCAQGSDMMYDAADDDDDDEKHRTIDHPSHPKHALKLVMRSCRFKCDACGITRGGKSYMCCKPNCQYWIHESCASLPQTIESEYHSHSLSLFFHVPPPYMKWDLKCDVCSKYLSSK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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