当前解析结果
SmilChr01G001586| 统一新 Gene ID | SmilChr01G001586 |
|---|---|
| 名称 | SmilChr01G001586 |
| 描述 | ankyrin repeat domain-containing protein 2B-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 29869945 - 29875021 / + |
| NCBI Gene ID | LOC131019197 |
|---|---|
| GeneID | 131019197 |
| locus_tag | - |
| NCBI Name | LOC131019197 |
| 原始查询 | LOC131019197 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat domain-containing protein 2B-like |
| 产物 | ankyrin repeat domain-containing protein 2B-like |
| Arabidopsis | AT2G17390 (AKR2B)ankyrin repeat-containing 2B [Source:NCBI gene (formerly Entrezgene);Acc:816246] identity=66.7; qcov=0.931; evalue=1.91e-149; confidence=high |
| Rice | Os09g0513000 (OsBIANK1)- identity=68.2; qcov=0.906; evalue=5.15e-156; confidence=high |
| GO | GO:0005515 (protein binding); GO:0009707 (chloroplast outer membrane); GO:0030941 (chloroplast targeting sequence receptor activity); GO:0045036 (protein targeting to chloroplast) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF17830 (STI1-HOP_DP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019197 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803856.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057803856.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803856.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803856.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803856.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:29871096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr1:29871158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr1:29871201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B36,C60 |
Chr1:29871995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C43 |
Chr1:29873816 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:29874081 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr1:29874410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B45,C34,C72,D8 |
Chr1:29874694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B122,C15,C36,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803856.1PF17830
STI1-HOP_DP 163-212 aa
PF12796
Ank_2 224-298 aa
PF13606
Ank_3 269-297 aa
PF00023
Ank 270-301 aa
PF13637
Ank_4 281-323 aa
PF13857
Ank_5 289-343 aa
PF12796
Ank_2 296-358 aa
PF00023
Ank 302-333 aa
PF13606
Ank_3 303-329 aa
PF13637
Ank_4 307-354 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803856.1 |
Pfam | PF17830 |
STI1-HOP_DP | Domain | 163 | 212 | 3.5e-13 | 49.9 | STI1/HOP, DP domain |
XP_057803856.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 224 | 298 | 2.8e-21 | 76.6 | Ankyrin repeats (3 copies) |
XP_057803856.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 269 | 297 | 4.1e-14 | 51.8 | Ankyrin repeat |
XP_057803856.1 |
Pfam | PF00023 |
Ank | Repeat | 270 | 301 | 2.1e-19 | 69.2 | Ankyrin repeat |
XP_057803856.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 281 | 323 | 4.8e-18 | 65.5 | Ankyrin repeats (many copies) |
XP_057803856.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 289 | 343 | 7.8e-16 | 58.7 | Ankyrin repeats (many copies) |
XP_057803856.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 296 | 358 | 2.8e-21 | 76.6 | Ankyrin repeats (3 copies) |
XP_057803856.1 |
Pfam | PF00023 |
Ank | Repeat | 302 | 333 | 2.1e-19 | 69.2 | Ankyrin repeat |
XP_057803856.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 303 | 329 | 4.1e-14 | 51.8 | Ankyrin repeat |
XP_057803856.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 307 | 354 | 4.8e-18 | 65.5 | Ankyrin repeats (many copies) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。