当前解析结果
SmilChr01G001593| 统一新 Gene ID | SmilChr01G001593 |
|---|---|
| 名称 | SmilChr01G001593 |
| 描述 | serine/threonine-protein kinase SRK2A |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 30004775 - 30008026 / - |
| NCBI Gene ID | LOC131019212 |
|---|---|
| GeneID | 131019212 |
| locus_tag | - |
| NCBI Name | LOC131019212 |
| 原始查询 | LOC131019212 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase SRK2A |
| 产物 | serine/threonine-protein kinase SRK2A |
| Arabidopsis | AT1G60940 (SNRK2.10)SNF1-related protein kinase 2.10 [Source:NCBI gene (formerly Entrezgene);Acc:842385] identity=83.1; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0432000 (SAPK7)- identity=81.3; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019212 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803857.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057803857.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057803857.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057803857.1 |
| 5 | Cell membrane | 细胞膜 | 0.20000 | XP_057803857.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:30005226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr1:30005372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:30005759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B121,B44,B83 |
Chr1:30005772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr1:30005787 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C12 |
Chr1:30005787 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C12 |
Chr1:30006924 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803857.1PF00069
Pkinase 4-260 aa
PF07714
PK_Tyr_Ser-Thr 5-256 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803857.1 |
Pfam | PF00069 |
Pkinase | Domain | 4 | 260 | 9.8e-73 | 245.5 | Protein kinase domain |
XP_057803857.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 5 | 256 | 6.9e-33 | 114.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。