Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001596`

染色体: Chr01 坐标: 30093211-30094926 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001596`
名称	SmilChr01G001596
描述	glyoxylate/hydroxypyruvate reductase HPR3-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	30093211 - 30094926 / `-`

ID 对照

NCBI Gene ID	`LOC131019274`
GeneID	`131019274`
locus_tag	`-`
NCBI Name	`LOC131019274`
原始查询	`LOC131019274`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glyoxylate/hydroxypyruvate reductase HPR3-like
产物	glyoxylate/hydroxypyruvate reductase HPR3-like
Arabidopsis	`AT2G45630` (AT2G45630) D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819171] identity=52.2; qcov=0.779; evalue=6.19e-113; confidence=high
Rice	`Os04g0107500` - identity=51.9; qcov=0.789; evalue=1.73e-113; confidence=high
GO	GO:0005829 (cytosol); GO:0016618 (hydroxypyruvate reductase [NAD(P)H] activity); GO:0030267 (glyoxylate reductase (NADPH) activity); GO:0051287 (NAD binding)
KEGG	-
Pfam	PF00389 (2-Hacid_dh); PF02826 (2-Hacid_dh_C); PF03446 (NAD_binding_2)
InterPro	-
eggNOG	-
NR	GeneID:131019274

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057803863.1`
2	Cytoplasm	细胞质	0.60000	`XP_057803863.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057803863.1`
4	Nucleus	细胞核	0.00000	`XP_057803863.1`
5	Chromosome	染色体	0.00000	`XP_057803863.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:30093542`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B46,B8,B94,C1,C52
`Chr1:30093604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B46,B8,B94,C1,C52
`Chr1:30093624`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	B7
`Chr1:30093624`	`AAG`	`A`	2bp_deletion	CDS_variant	1	B7
`Chr1:30093722`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C15,D9
`Chr1:30093797`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B133,B78,C16,D11
`Chr1:30093847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B121,B44,B83
`Chr1:30093851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C15,D9
`Chr1:30093862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:30094510`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B49
`Chr1:30094510`	`TG`	`T`	1bp_deletion	CDS_variant	1	B49
`Chr1:30094517`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803863.1

408 aa

204

408

2-Hacid_dh

2-Hacid_dh_C

NAD_binding_2

PF00389 2-Hacid_dh 128-404 aa PF02826 2-Hacid_dh_C 200-373 aa PF03446 NAD_binding_2 238-339 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803863.1`	Pfam	`PF00389`	2-Hacid_dh	Domain	128	404	3.5e-19	69.5	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
`XP_057803863.1`	Pfam	`PF02826`	2-Hacid_dh_C	Domain	200	373	4.3e-53	180.0	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
`XP_057803863.1`	Pfam	`PF03446`	NAD_binding_2	Domain	238	339	3.4e-07	31.2	NAD binding domain of 6-phosphogluconate dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947880.1
TTACCCCAAACAATAATTACTTTTCCAAGTTTGAAAAACTAGTTGAATCACATGGGCGATCCTAATATTAAATTTATTCACACGAAAGGAAGAAAGAAAGCATATATAAACAATAGAAAACGAGTAGTTGGGAAGGGCAACAACTACAAAAGCAAGGTAAACGCCACCTTTCTTTCCTCGAACCAAACCAAACCATTCCATATATTCTTCTACATTTCTAATTTTCTACTACACAAAATGGGTCAAGAAATCAACCCTCA...

CDS

1 records

下载 CDS FASTA

LOC131019274
ATGGGCGATCCTAATATTAAATTTATTCACACGAAAGGAAGAAAGAAAGCATATATAAACAATAGAAAACGAGTAGTTGGGAAGGGCAACAACTACAAAAGCAAGGTAAACGCCACCTTTCTTTCCTCGAACCAAACCAAACCATTCCATATATTCTTCTACATTTCTAATTTTCTACTACACAAAATGGGTCAAGAAATCAACCCTCAAACCAACGGCTTCCACCACCACCTCAACGGCGCCGGCCCGCCGCTCCCCGG...

Protein

1 records

下载 Protein FASTA

XP_057803863.1
MGDPNIKFIHTKGRKKAYINNRKRVVGKGNNYKSKVNATFLSSNQTKPFHIFFYISNFLLHKMGQEINPQTNGFHHHLNGAGPPLPGGDLPDLLVLRPGLLFKVFEQEFLAKFNVLKAYESPLPLDTYLREHAQSARAILCEAIVTRITAELLLQLPALELVVADGTGVNHIDLAACRRRGISVTNTGDVFSEDTADYGVGLLIDVMRRISRADAFVRRGSWPVTGQFPLGLKVRGKRVGIVGLGNIGTKLAKRLEVFGC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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