Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001615`

染色体: Chr01 坐标: 30276110-30278142 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001615`
名称	SmilChr01G001615
描述	uncharacterized SmilChr01G001615
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	30276110 - 30278142 / `+`

ID 对照

NCBI Gene ID	`LOC131019360`
GeneID	`131019360`
locus_tag	`-`
NCBI Name	`LOC131019360`
原始查询	`LOC131019360`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high
产物	hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high
Arabidopsis	`AT5G33406` (AT5G33406) hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333] identity=69; qcov=0.787; evalue=3.79e-130; confidence=high
Rice	`Os09g0499600` - identity=42.4; qcov=0.981; evalue=1.34e-79; confidence=medium
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF04937 (DUF659); PF05699 (Dimer_Tnp_hAT)
InterPro	-
eggNOG	-
NR	GeneID:131019360

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057803877.1`
2	Cytosol	细胞质基质	0.40000	`XP_057803877.1`
3	Cytoplasm	细胞质	0.20000	`XP_057803877.1`
4	Chromosome	染色体	0.00000	`XP_057803877.1`
5	Centromere	着丝粒	0.00000	`XP_057803877.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:30276691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B4,B78,C22,C36,D9
`Chr1:30276697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr1:30276727`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	A4,B119
`Chr1:30276727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,B119
`Chr1:30276732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B77,C44
`Chr1:30276740`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B4,B66,B82,C36
`Chr1:30276774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B97,C43
`Chr1:30276782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,D4
`Chr1:30276810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:30276817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,C14
`Chr1:30276851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C15,D9
`Chr1:30276883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803877.1

320 aa

160

320

DUF659

Dimer_Tnp_hAT

PF04937 DUF659 2-43 aa PF05699 Dimer_Tnp_hAT 271-310 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803877.1`	Pfam	`PF04937`	DUF659	Domain	2	43	1.9e-13	51.0	Domain of unknown function (DUF659)
`XP_057803877.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	271	310	5.1e-07	30.1	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947894.1
AGAAAGAAAATGAGTCTTTGGTGCTAGTAACAAGTTATGTAGGGAAAGAGCTTGTAAAGCAATTGCAAGGTTCTTTTATGACAATGCTATTCCCTTCCATCCGGCCACTAGTGATAGCTTCAAGAACATGGTTGAAGAAATTGGACAATATGGTCCCGGATTGGAACCACCGAGCATCTATGAGCTAAGAGTTCATTTTCTTCAAAAGGAAGTGGAAGACACGGACACCAAAGTGTTGGAGTTCAAGAAAGAATGGGCCA...

CDS

1 records

下载 CDS FASTA

LOC131019360
ATGATAGGGAAATTGCTTATGACAAAAAGACCACATCTTTATTGGACTCCATGTGCCGCACATTGCGTGGACTTGATGTTGGAGGATATTGGAAAGCTTCCAAAGATCAAGAATGCCCTCAAGAAGGCGATCTTCATGAATGGTTATATATATAACCACGTCATTGTTGTCAACATGATGAGAAGATTCACAAATCAAAGGAATTTGCATCGACCGGCGGTCACAAGGTTTGCAACTTTCTTTATCACTCTTGCACAATA...

Protein

1 records

下载 Protein FASTA

XP_057803877.1
MIGKLLMTKRPHLYWTPCAAHCVDLMLEDIGKLPKIKNALKKAIFMNGYIYNHVIVVNMMRRFTNQRNLHRPAVTRFATFFITLAQYHKQKNNLRKMVTSEEWNASKWPKEAGGKKVTTYILQDTFWRNVLHALKLGGPLVTVLRMVDGDKKPAMGYIYEAMDRAKEAIAKSFGHKEEHYKEAFEIIDKRWDCQLHHPLHAAGYFLNPEIYYDNPDQVSCQEVEKGLYECIQRLIPDEATQDKLMVELDAYKNAEGLFGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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