当前解析结果
SmilChr01G001585| 统一新 Gene ID | SmilChr01G001585 |
|---|---|
| 名称 | SmilChr01G001585 |
| 描述 | transmembrane emp24 domain-containing protein p24delta3-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 29867004 - 29868383 / - |
| NCBI Gene ID | LOC131019406 |
|---|---|
| GeneID | 131019406 |
| locus_tag | - |
| NCBI Name | LOC131019406 |
| 原始查询 | LOC131019406 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transmembrane emp24 domain-containing protein p24delta3-like |
| 产物 | transmembrane emp24 domain-containing protein p24delta3-like |
| Arabidopsis | AT1G09580 (AT1G09580)emp24/gp25L/p24 family/GOLD family protein [Source:NCBI gene (formerly Entrezgene);Acc:837485] identity=66; qcov=0.901; evalue=2.47e-96; confidence=high |
| Rice | Os02g0768200- identity=64.4; qcov=0.901; evalue=5.2e-94; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum); GO:0005793 (endoplasmic reticulum-Golgi intermediate compartment); GO:0005794 (Golgi apparatus); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0007030 (Golgi organization); GO:0030134 (COPII-coated ER to Golgi transport vesicle) |
| KEGG | - |
| Pfam | PF01105 (EMP24_GP25L) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019406 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057803935.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057803935.1 |
| 3 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057803935.1 |
| 4 | Cis-golgi network | Cis-golgi network | 1.00000 | XP_057803935.1 |
| 5 | Endoplasmic reticulum-golgi intermediate compartment | Endoplasmic reticulum-golgi intermediate compartment | 0.80000 | XP_057803935.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:29867222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B8,B82,B83,D2 |
Chr1:29867330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,B87 |
Chr1:29867494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B98,C48,D10 |
Chr1:29867614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:29868102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803935.1PF01105
EMP24_GP25L 24-207 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803935.1 |
Pfam | PF01105 |
EMP24_GP25L | Domain | 24 | 207 | 3.2e-48 | 164.9 | emp24/gp25L/p24 family/GOLD |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。