Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001371`

染色体: Chr04 坐标: 22251609-22269918 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001371`
名称	SmilChr04G001371
描述	phosphatidylserine decarboxylase proenzyme 3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	22251609 - 22269918 / `-`

ID 对照

NCBI Gene ID	`LOC131019415`
GeneID	`131019415`
locus_tag	`-`
NCBI Name	`LOC131019415`
原始查询	`LOC131019415`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatidylserine decarboxylase proenzyme 3-like
产物	phosphatidylserine decarboxylase proenzyme 3-like
Arabidopsis	`AT5G57190` (PSD2) phosphatidylserine decarboxylase 2 [Source:NCBI gene (formerly Entrezgene);Acc:835825] identity=73; qcov=0.96; evalue=0; confidence=high
Rice	`Os01g0959800` - identity=76.9; qcov=0.703; evalue=0; confidence=high
GO	GO:0004609 (phosphatidylserine decarboxylase activity); GO:0005509 (calcium ion binding); GO:0008654 (phospholipid biosynthetic process)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00168 (C2); PF02666 (PS_Dcarbxylase); PF13202 (EF-hand_5)
InterPro	-
eggNOG	-
NR	GeneID:131019415

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057803942.1`
2	Cytosol	细胞质基质	0.40000	`XP_057803944.1`
3	Cytoplasm	细胞质	0.20000	`XP_057803943.1`
4	Mitochondrion	线粒体	0.20000	`XP_057803944.1`
5	Golgi apparatus	高尔基体	0.20000	`XP_057803942.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:22253149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr4:22253520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr4:22253529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:22257698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr4:22257731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:22257740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B79
`Chr4:22257786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,C37,C53,C87
`Chr4:22259603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr4:22260124`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr4:22262506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr4:22267566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,C39,C75,C82
`Chr4:22269598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803942.1

651 aa

326

651

EF-hand_5

PS_Dcarbxylase

PF00168 C2 83-156 aa PF13202 EF-hand_5 237-258 aa PF02666 PS_Dcarbxylase 434-629 aa

XP_057803943.1

642 aa

321

642

EF-hand_5

PS_Dcarbxylase

PF00168 C2 83-147 aa PF13202 EF-hand_5 228-249 aa PF02666 PS_Dcarbxylase 425-620 aa

XP_057803944.1

555 aa

278

555

EF-hand_5

PS_Dcarbxylase

PF13202 EF-hand_5 141-162 aa PF02666 PS_Dcarbxylase 338-533 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803942.1`	Pfam	`PF00168`	C2	Domain	83	156	0.00012	23.0	C2 domain
`XP_057803942.1`	Pfam	`PF13202`	EF-hand_5	Domain	237	258	3e-07	30.3	EF hand
`XP_057803942.1`	Pfam	`PF02666`	PS_Dcarbxylase	Family	434	629	3.4e-61	207.1	Phosphatidylserine decarboxylase
`XP_057803943.1`	Pfam	`PF00168`	C2	Domain	83	147	5.4e-07	30.5	C2 domain
`XP_057803943.1`	Pfam	`PF13202`	EF-hand_5	Domain	228	249	2.9e-07	30.4	EF hand
`XP_057803943.1`	Pfam	`PF02666`	PS_Dcarbxylase	Family	425	620	3.4e-61	207.1	Phosphatidylserine decarboxylase
`XP_057803944.1`	Pfam	`PF13202`	EF-hand_5	Domain	141	162	1.9e-07	31.0	EF hand
`XP_057803944.1`	Pfam	`PF02666`	PS_Dcarbxylase	Family	338	533	2.5e-61	207.6	Phosphatidylserine decarboxylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009100251.1
TGGTGCTATCCATGACACCTGGGATACTACCCCAAAAATTTTCGCCATAGTTTCAGTATATGCTTCCAGATTCGAAGAAGTCAAAGCGTTACTGATTGCCCTTTCCACTTTTTTCCACCTTTGTTTGGGACACTACCATAAAATCCCAATCACTTTTCGATCGTTGTAGTCTATTGTTGCTGTGTAAGATGGGCCATGGAACCTCCAAAGATGAACCTCAGGAAGACTCATCGGATTCCTCTGCTTCCACAACTTCCAGA...

XR_009100252.1
GGTGCTATCCATGACACCTGGGATACTACCCCAAAAATTTTCGCCATAGTTTCAGTATATGCTTCCAGATTCGAAGAAGTCAAAGCGTTACTGATTGCCCTTTCCACTTTTTTCCACCTTTGTTTGGGACACTACCATAAAATCCCAATCACTTTTCGATCGTTGTAGTCTATTGTTGCTGTGTAAGATGGGCCATGGAACCTCCAAAGATGAACCTCAGGAAGACTCATCGGATTCCTCTGCTTCCACAACTTCCAGAA...

CDS

3 records

下载 CDS FASTA

LOC131019415
ATGGGCCATGGAACCTCCAAAGATGAACCTCAGGAAGACTCATCGGATTCCTCTGCTTCCACAACTTCCAGAATTCAAAGACTCCGGCAGCGCCTCCACCGCCACCGTCTCCATTTTCGCCGCCTCCACCGTGGCTCCGGTTCTGGCTCCCAGTTAAGCAAACTACTCAAGGAGGAAGACTTCGCCGGCATCGCCCTCCTCCGCCTCATCGGCGCGGAGATGAGATTCAAGGACAAATGGCTTGCATGTGTTTCTGTCGG...

Protein

3 records

下载 Protein FASTA

XP_057803942.1
MGHGTSKDEPQEDSSDSSASTTSRIQRLRQRLHRHRLHFRRLHRGSGSGSQLSKLLKEEDFAGIALLRLIGAEMRFKDKWLACVSVGEQTFRTAISDQTDQPVWNSVKNHYITLQEKKLLLERNGARVARISVFETNRLSKNNLIGYCEIDLYDFLTRDSDSDIDAYDLIDPTSAGGIVGKIRLSCSIEDPMETEKSFVRRILSVVDYDESGNLSYAEFSDLIDAFGNQLAATKKEELFKAADENGDGVVSIDELAMLLA...

XP_057803943.1
MGHGTSKDEPQEDSSDSSASTTSRIQRLRQRLHRHRLHFRRLHRGSGSGSQLSKLLKEEDFAGIALLRLIGAEMRFKDKWLACVSVGEQTFRTAISDQTDQPVWNSEKKLLLERNGARVARISVFETNRLSKNNLIGYCEIDLYDFLTRDSDSDIDAYDLIDPTSAGGIVGKIRLSCSIEDPMETEKSFVRRILSVVDYDESGNLSYAEFSDLIDAFGNQLAATKKEELFKAADENGDGVVSIDELAMLLAVQQEKDPLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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