当前解析结果
SmilChr04G001381| 统一新 Gene ID | SmilChr04G001381 |
|---|---|
| 名称 | SmilChr04G001381 |
| 描述 | dynamin-like protein ARC5 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 22403394 - 22419785 / - |
| NCBI Gene ID | LOC131019423 |
|---|---|
| GeneID | 131019423 |
| locus_tag | - |
| NCBI Name | LOC131019423 |
| 原始查询 | LOC131019423 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dynamin-like protein ARC5 |
| 产物 | dynamin-like protein ARC5 |
| Arabidopsis | AT3G19720 (ARC5)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821509] identity=77.7; qcov=0.992; evalue=0; confidence=high |
| Rice | Os12g0178700 (ARC5)- identity=72.5; qcov=0.713; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005874 (microtubule); GO:0008017 (microtubule binding); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00350 (Dynamin_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019423 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803948.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803948.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057803948.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057803948.1 |
| 5 | Mitochondrion outer membrane | 线粒体外膜 | 0.20000 | XP_057803948.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:22404763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr4:22404889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:22404896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:22406074 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr4:22406108 |
AC |
A |
1bp_deletion | frameshift_variant | 13 | A4,A9,B19,B78,C17,C19,C30,C31,C35,C45,C46,C53,C74 |
Chr4:22409330 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | B119 |
Chr4:22409330 |
G |
GT |
1bp_insertion | CDS_variant | 1 | B119 |
Chr4:22409575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr4:22411031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B96,C58,D10 |
Chr4:22412177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:22412183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B35,C16,C62,D3 |
Chr4:22412465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803948.1PF00350
Dynamin_N 46-227 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803948.1 |
Pfam | PF00350 |
Dynamin_N | Domain | 46 | 227 | 9.5e-33 | 114.3 | Dynamin family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。