Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001392`

染色体: Chr04 坐标: 22626228-22632741 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001392`
名称	SmilChr04G001392
描述	protein RAE1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	22626228 - 22632741 / `-`

ID 对照

NCBI Gene ID	`LOC131019434`
GeneID	`131019434`
locus_tag	`-`
NCBI Name	`LOC131019434`
原始查询	`LOC131019434`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein RAE1-like
产物	protein RAE1-like
Arabidopsis	`AT1G80670` (RAE1) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844406] identity=80.2; qcov=1; evalue=0; confidence=high
Rice	`Os08g0176800` (OsWD40-156) - identity=81.8; qcov=0.997; evalue=0; confidence=high
GO	GO:0000972 (transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery); GO:0003723 (RNA binding); GO:0005643 (nuclear pore); GO:0006405 (RNA export from nucleus); GO:0043130 (ubiquitin binding)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131019434

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803957.1`
2	Chromosome	染色体	0.80000	`XP_057803958.1`
3	Nuclear pore complex	核孔复合体	0.80000	`XP_057803958.1`
4	Nucleoplasm	核质	0.80000	`XP_057803958.1`
5	Nucleus membrane	核膜	0.60000	`XP_057803958.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:22626464`	`AT`	`A`	1bp_deletion	frameshift_variant	30	A10,A11,A15,A16,B108,B117,B118,B138,B23,B30,B38,B39,B7,B80,B83,B85,B87,B9,B94,C13,C34,C4,C43,C58,C59,C72,C78,C79,C8,D6
`Chr4:22626485`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B2
`Chr4:22626485`	`AG`	`A`	1bp_deletion	CDS_variant	1	B2
`Chr4:22626486`	`G`	`GA`	1bp_insertion	frameshift_variant	62	A18,A20,A21,A23,A24,A25,A7,A9,B100,B101,B102,B111,B12,B126,B127,B128,B129,B133,B135,B136,B17,B23,B26,B3,B35,B37,B4,B41,B50,B51,B55,B57,B60,B66,B69,B70,B73,B77,B88,B89,B9,B98,C10,C16,C17,C19,C21,C26,C27,C36,C40,C45,C5,C54,C55,C57,C65,C72,C74,C79,D4,D8
`Chr4:22626488`	`AT`	`A`	1bp_deletion	frameshift_variant	62	A18,A20,A21,A23,A24,A25,A7,A9,B100,B101,B102,B111,B12,B126,B127,B128,B129,B133,B135,B136,B17,B23,B26,B3,B35,B37,B4,B41,B50,B51,B55,B57,B60,B66,B69,B70,B73,B77,B88,B89,B9,B98,C10,C16,C17,C19,C21,C26,C27,C36,C40,C45,C5,C54,C55,C57,C65,C72,C74,C79,D4,D8
`Chr4:22626494`	`G`	`GAA`	2bp_insertion	frameshift_variant	4	B12,C17,C45,D4
`Chr4:22626494`	`G`	`GAA`	2bp_insertion	CDS_variant	4	B12,C17,C45,D4
`Chr4:22626507`	`AAC`	`A`	2bp_deletion	frameshift_variant	1	B91
`Chr4:22626507`	`AAC`	`A`	2bp_deletion	CDS_variant	1	B91
`Chr4:22626531`	`G`	`A`	EMS_canonical_SNV	stop_gained	21	B102,B103,B104,B11,B12,B123,B130,B138,B139,B16,B89,B97,C16,C17,C24,C31,C45,C7,C74,D3,D4
`Chr4:22626576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B34,C20,D11
`Chr4:22627424`	`C`	`T`	EMS_canonical_SNV	stop_gained	15	A18,B1,B3,B30,B58,B63,B69,B79,B80,B84,B88,B99,C18,C87,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803957.1

365 aa

182

365

WD40

PF00400 WD40 19-51 aa PF00400 WD40 69-98 aa PF00400 WD40 111-141 aa PF00400 WD40 234-273 aa

XP_057803958.1

348 aa

174

348

WD40

PF00400 WD40 19-51 aa PF00400 WD40 69-98 aa PF00400 WD40 111-141 aa PF00400 WD40 234-273 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803957.1`	Pfam	`PF00400`	WD40	Repeat	19	51	1.1e-27	96.0	WD domain, G-beta repeat
`XP_057803957.1`	Pfam	`PF00400`	WD40	Repeat	69	98	1.1e-27	96.0	WD domain, G-beta repeat
`XP_057803957.1`	Pfam	`PF00400`	WD40	Repeat	111	141	1.1e-27	96.0	WD domain, G-beta repeat
`XP_057803957.1`	Pfam	`PF00400`	WD40	Repeat	234	273	1.1e-27	96.0	WD domain, G-beta repeat
`XP_057803958.1`	Pfam	`PF00400`	WD40	Repeat	19	51	7.7e-28	96.5	WD domain, G-beta repeat
`XP_057803958.1`	Pfam	`PF00400`	WD40	Repeat	69	98	7.7e-28	96.5	WD domain, G-beta repeat
`XP_057803958.1`	Pfam	`PF00400`	WD40	Repeat	111	141	7.7e-28	96.5	WD domain, G-beta repeat
`XP_057803958.1`	Pfam	`PF00400`	WD40	Repeat	234	273	7.7e-28	96.5	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057947975.1
GTTCTCAAAATAACTGGAAATCGGACCGCACGGCATTCTCTGCTGCTTTTAGGCTTTACTACTTTTTTTTCCCTTGCTACTTTGCTATATACCGCCCAGCATTCTTTCAAATCTCCAACCTCTCTATATGCAGTAATTCATCTCTCTAATTCGCTGAAGTTCCTTACTTTCTCTCTCTAGCAGACTTCTCTCTTGAAGATTTCTAGGGTTTAACAATATGGCTACATTCGGCGCTTCAACGACTAACGCCAATCCTAATC...

XM_057947974.1
CAAAATAACTGGAAATCGGACCGCACGGCATTCTCTGCTGCTTTTAGGCTTTACTACTTTTTTTTCCCTTGCTACTTTGCTATATACCGCCCAGCATTCTTTCAAATCTCCAACCTCTCTATATGCAGTAATTCATCTCTCTAATTCGCTGAAGTTCCTTACTTTCTCTCTCTAGCAGACTTCTCTCTTGAAGATTTCTAGGGTTTAACAATATGGCTACATTCGGCGCTTCAACGACTAACGCCAATCCTAATCGTTCG...

CDS

2 records

下载 CDS FASTA

LOC131019434
ATGGCTACATTCGGCGCTTCAACGACTAACGCCAATCCTAATCGTTCGACTGAGGTGTTGTCACCTCCGAGTGATTCAGTTTCGAGCCTGTGTTTTAGTTCTAAGGCCAATCATTTGGTCGCTACGTCGTGGGATAATCAGGTACGATGTTGGGAGGTGATGAAATCAGGAACCACTGTGAACACTGTACCTAAGGCTTCAATATCACATGATCAACCGGTCTTATGCTCAGCTTGGAAGGATGATGGAACAACTGTATT...

Protein

2 records

下载 Protein FASTA

XP_057803957.1
MATFGASTTNANPNRSTEVLSPPSDSVSSLCFSSKANHLVATSWDNQVRCWEVMKSGTTVNTVPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPVKELAWIPEMSLLVTGSWDKTLRYWDLRQQNPTWVQQLPERCYALTVKHPLMVVGTADRNLVVFNLQNPQTEFKRVVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDAQSSKNFTFKCHRDGNDIYSVNSLNFHPVHQTF...

XP_057803958.1
MATFGASTTNANPNRSTEVLSPPSDSVSSLCFSSKANHLVATSWDNQVRCWEVMKSGTTVNTVPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPVKELAWIPEMSLLVTGSWDKTLRYWDLRQQNPTWVQQLPERCYALTVKHPLMVVGTADRNLVVFNLQNPQTEFKRVVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDDAQSSKNFTFKCHRDGNDIYSVNSLNFHPVHQTF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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