当前解析结果
SmilChr01G001603| 统一新 Gene ID | SmilChr01G001603 |
|---|---|
| 名称 | SmilChr01G001603 |
| 描述 | uncharacterized SmilChr01G001603 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 30196249 - 30197151 / + |
| NCBI Gene ID | LOC131019441 |
|---|---|
| GeneID | 131019441 |
| locus_tag | - |
| NCBI Name | LOC131019441 |
| 原始查询 | LOC131019441 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os07g0173100; species=rice; confidence=low |
| 产物 | hit=Os07g0173100; species=rice; confidence=low |
| Arabidopsis | AT4G14830 (HSP1)17.6 kDa class II heat shock protein [Source:NCBI gene (formerly Entrezgene);Acc:827140] identity=47.7; qcov=0.799; evalue=1.54e-18; confidence=low |
| Rice | Os07g0173100- identity=52.6; qcov=0.709; evalue=1.37e-18; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019441 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803974.1 |
| 2 | Mitochondrion | 线粒体 | 0.40000 | XP_057803974.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057803974.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057803974.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803974.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:30196493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr1:30196519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B77,C34,C63 |
Chr1:30196520 |
TGC |
T |
2bp_deletion | frameshift_variant | 1 | B53 |
Chr1:30196520 |
TGC |
T |
2bp_deletion | CDS_variant | 1 | B53 |
Chr1:30196521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C43 |
Chr1:30196522 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B77,C34,C63 |
Chr1:30196522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B77,C34,C63 |
Chr1:30196539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C62,D9 |
Chr1:30196543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:30196567 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B136,C11,C69 |
Chr1:30196567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,C11,C69 |
Chr1:30196569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,B33 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。