当前解析结果
SmilChr04G001458| 统一新 Gene ID | SmilChr04G001458 |
|---|---|
| 名称 | SmilChr04G001458 |
| 描述 | uncharacterized SmilChr04G001458 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 23991754 - 23994635 / - |
| NCBI Gene ID | LOC131019491 |
|---|---|
| GeneID | 131019491 |
| locus_tag | - |
| NCBI Name | LOC131019491 |
| 原始查询 | LOC131019491 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Aldolase-type TIM barrel family protein [Source:NCBI gene (formerly Entrezgene);Acc:836546]; symbol=AT5G64250; hit=AT5G64250; species=arabidopsis; confidence=high |
| 产物 | Aldolase-type TIM barrel family protein [Source:NCBI gene (formerly Entrezgene);Acc:836546]; symbol=AT5G64250; hit=AT5G64250; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G64250 (AT5G64250)Aldolase-type TIM barrel family protein [Source:NCBI gene (formerly Entrezgene);Acc:836546] identity=77.4; qcov=0.953; evalue=0; confidence=high |
| Rice | Os08g0485400 (P0481F05.4-1)- identity=70.4; qcov=0.787; evalue=7.3e-132; confidence=high |
| GO | GO:0018580 (nitronate monooxygenase activity) |
| KEGG | - |
| Pfam | PF00478 (IMPDH); PF01070 (FMN_dh); PF03060 (NMO) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019491 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057804018.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057804018.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057804017.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057804017.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057804018.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:23991911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B53,C42 |
Chr4:23991988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr4:23992007 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C11,C69 |
Chr4:23992007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr4:23992064 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B16,B53 |
Chr4:23992064 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B16,B53 |
Chr4:23992109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:23992140 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr4:23992553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr4:23992570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B65,B77 |
Chr4:23992688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,C37 |
Chr4:23993372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,B53,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804017.1PF03060
NMO 6-75 aa
PF03060
NMO 76-244 aa
PF01070
FMN_dh 117-199 aa
PF00478
IMPDH 125-210 aa
XP_057804018.1PF03060
NMO 6-73 aa
PF03060
NMO 76-319 aa
PF01070
FMN_dh 117-199 aa
PF00478
IMPDH 125-210 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804017.1 |
Pfam | PF03060 |
NMO | Domain | 6 | 75 | 9.5e-54 | 183.7 | Nitronate monooxygenase |
XP_057804017.1 |
Pfam | PF03060 |
NMO | Domain | 76 | 244 | 9.5e-54 | 183.7 | Nitronate monooxygenase |
XP_057804017.1 |
Pfam | PF01070 |
FMN_dh | Domain | 117 | 199 | 6e-07 | 29.5 | FMN-dependent dehydrogenase |
XP_057804017.1 |
Pfam | PF00478 |
IMPDH | Domain | 125 | 210 | 8.2e-07 | 29.1 | IMP dehydrogenase / GMP reductase domain |
XP_057804018.1 |
Pfam | PF03060 |
NMO | Domain | 6 | 73 | 4.3e-60 | 204.6 | Nitronate monooxygenase |
XP_057804018.1 |
Pfam | PF03060 |
NMO | Domain | 76 | 319 | 4.3e-60 | 204.6 | Nitronate monooxygenase |
XP_057804018.1 |
Pfam | PF01070 |
FMN_dh | Domain | 117 | 199 | 5.7e-07 | 29.6 | FMN-dependent dehydrogenase |
XP_057804018.1 |
Pfam | PF00478 |
IMPDH | Domain | 125 | 210 | 8.1e-07 | 29.1 | IMP dehydrogenase / GMP reductase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。