Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001466`

染色体: Chr04 坐标: 24083780-24088512 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001466`
名称	SmilChr04G001466
描述	2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	24083780 - 24088512 / `+`

ID 对照

NCBI Gene ID	`LOC131019496`
GeneID	`131019496`
locus_tag	`-`
NCBI Name	`LOC131019496`
原始查询	`LOC131019496`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic
产物	2-carboxy-1%2C4-naphthoquinone phytyltransferase%2C chloroplastic
Arabidopsis	`AT1G60600` (ABC4) UbiA prenyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842354] identity=59.4; qcov=0.869; evalue=1.7e-136; confidence=high
Rice	`Os03g0190100` (OsPPT1) - identity=60.4; qcov=0.801; evalue=3.93e-133; confidence=high
GO	GO:0004659 (prenyltransferase activity); GO:0016020 (membrane); GO:0032194 (GO:0032194); GO:0042372 (phylloquinone biosynthetic process)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01040 (UbiA)
InterPro	-
eggNOG	-
NR	GeneID:131019496

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057804020.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057804020.1`
3	Nucleus	细胞核	0.00000	`XP_057804020.1`
4	Chromosome	染色体	0.00000	`XP_057804020.1`
5	Centromere	着丝粒	0.00000	`XP_057804020.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:24084035`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B57,B88,C27,C55
`Chr4:24084092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:24084093`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr4:24086022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B139,C18,C22,C44
`Chr4:24086719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr4:24087124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B140,C48
`Chr4:24087132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr4:24087157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C38
`Chr4:24087420`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr4:24087578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804020.1

401 aa

200

401

UbiA

PF01040 UbiA 105-367 aa

XP_057804021.1

397 aa

198

397

UbiA

PF01040 UbiA 105-363 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804020.1`	Pfam	`PF01040`	UbiA	Family	105	367	2.5e-24	86.6	UbiA prenyltransferase family
`XP_057804021.1`	Pfam	`PF01040`	UbiA	Family	105	363	1.6e-24	87.3	UbiA prenyltransferase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948038.1
ATATCTATTAATCTGGTAGGCCCGTAGAGGTGGGAAACGAACTGTAACTACTAGTCTAAAACTTCCCTTGGGCACAAACTGTGCGGTTTAAATCTGTTTATCTCTTCGTATCTCTCTTTCTCTCTCTACAATTAATCACTCACTGCTCCAAATAACAGGAGCTTCTCAGAATTCTTTGGTCTTCCCGACGTTTCTCGGGCACAAAATTGGTAGGCCCGTTTCGCTATGGCAGCAGCTGCATTCTGTTACATGACCCATCG...

XM_057948037.1
CGAACTGTAACTACTAGTCTAAAACTTCCCTTGGGCACAAACTGTGCGGTTTAAATCTGTTTATCTCTTCGTATCTCTCTTTCTCTCTCTACAATTAATCACTCACTGCTCCAAATAACAGGAGCTTCTCAGAATTCTTTGGTCTTCCCGACGTTTCTCGGGCACAAAATTGGTAGGCCCGTTTCGCTATGGCAGCAGCTGCATTCTGTTACATGACCCATCGCCATGGCGTCAACAACCTCAATCAACTTCTTCCCCAC...

CDS

2 records

下载 CDS FASTA

LOC131019496
ATGGCAGCAGCTGCATTCTGTTACATGACCCATCGCCATGGCGTCAACAACCTCAATCAACTTCTTCCCCACACCCATACTGTTAATCGGATTGATCATGTGTTGTCTCTTCCAGATGTTGGTCTTAGGCCATCAAATTCGAAAATATATTTGAATAAAGCGATTACCACGAGAACATCACATTCTACACAAAGGCAGCACAGAATCTTGTTAAAGTGCGCGGTACAGCAATATAGTGAAGAAGCGAAGGAGGAGCATAT...

Protein

2 records

下载 Protein FASTA

XP_057804020.1
MAAAAFCYMTHRHGVNNLNQLLPHTHTVNRIDHVLSLPDVGLRPSNSKIYLNKAITTRTSHSTQRQHRILLKCAVQQYSEEAKEEHISKATLIWRAIKLPMYTVALIPITVGSAAAYFETGQYFANRFLRLFVSSACIIAWVNLSNDVYDFDTGADINKKESVVNLVGSRTWTHVLAWILLALGFIGLSWVSVEASSLRPILLLSYAIVCGYVYQCPPFRLSYMGLGEPLCFAAFGPFATIAFYLLQSGTNYADRVLSIS...

XP_057804021.1
MAAAAFCYMTHRHGVNNLNQLLPHTHTVNRIDHVLSLPDVGLRPSNSKIYLNKAITTRTSHSTQRQHRILLKCAVQQYSEEAKEEHISKATLIWRAIKLPMYTVALIPITVGSAAAYFETGQYFANRFLRLFVSSACIIAWVNLSNDVYDFDTGADINKKESVVNLVGSRTWTHVLAWILLALGFIGLSWVSVEASSLRPILLLSYAIVCGYVYQCPPFRLSYMGLGEPLCFAAFGPFATIAFYLLQSGTKVLSISGAVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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