Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001472`

染色体: Chr04 坐标: 24156683-24167333 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001472`
名称	SmilChr04G001472
描述	probable DNA helicase MCM9
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	24156683 - 24167333 / `+`

ID 对照

NCBI Gene ID	`LOC131019503`
GeneID	`131019503`
locus_tag	`-`
NCBI Name	`LOC131019503`
原始查询	`LOC131019503`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable DNA helicase MCM9
产物	probable DNA helicase MCM9
Arabidopsis	`AT2G14050` (MCM9) minichromosome maintenance 9 [Source:NCBI gene (formerly Entrezgene);Acc:815890] identity=75.7; qcov=0.973; evalue=0; confidence=high
Rice	`Os06g0218500` (OsMCM9) - identity=70.5; qcov=0.965; evalue=0; confidence=high
GO	GO:0000724 (double-strand break repair via homologous recombination); GO:0003697 (single-stranded DNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0017116 (single-stranded DNA helicase activity); GO:0032508 (GO:0032508); GO:0042555 (MCM complex)
KEGG	-
Pfam	PF00004 (AAA); PF00493 (MCM); PF01078 (Mg_chelatase); PF07728 (AAA_5); PF17207 (MCM_OB); PF17855 (MCM_lid); PF26066 (MCM9_N)
InterPro	-
eggNOG	-
NR	GeneID:131019503

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804030.1`
2	Chromosome	染色体	0.60000	`XP_057804036.1`
3	Nucleoplasm	核质	0.40000	`XP_057804036.1`
4	Centromere	着丝粒	0.00000	`XP_057804030.1`
5	Chromatin	染色质	0.00000	`XP_057804030.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:24158384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr4:24158956`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,C18,C22
`Chr4:24161102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr4:24162326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,C87
`Chr4:24162365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C23,C85
`Chr4:24165112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr4:24165450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804030.1

701 aa

350

701

MCM9_N

MCM_OB

MCM

MCM_lid

PF26066 MCM9_N 9-99 aa PF17207 MCM_OB 117-259 aa PF00493 MCM 318-432 aa PF00493 MCM 460-548 aa PF17855 MCM_lid 569-650 aa

XP_057804031.1

701 aa

350

701

MCM9_N

MCM_OB

MCM

MCM_lid

PF26066 MCM9_N 9-99 aa PF17207 MCM_OB 117-259 aa PF00493 MCM 318-432 aa PF00493 MCM 460-548 aa PF17855 MCM_lid 569-650 aa

XP_057804032.1

701 aa

350

701

MCM9_N

MCM_OB

MCM

MCM_lid

PF26066 MCM9_N 9-99 aa PF17207 MCM_OB 117-259 aa PF00493 MCM 318-432 aa PF00493 MCM 460-548 aa PF17855 MCM_lid 569-650 aa

XP_057804033.1

701 aa

350

701

MCM9_N

MCM_OB

MCM

MCM_lid

PF26066 MCM9_N 9-99 aa PF17207 MCM_OB 117-259 aa PF00493 MCM 318-432 aa PF00493 MCM 460-548 aa PF17855 MCM_lid 569-650 aa

XP_057804034.1

684 aa

342

684

MCM9_N

MCM_OB

MCM

MCM_lid

PF26066 MCM9_N 9-99 aa PF17207 MCM_OB 117-242 aa PF00493 MCM 301-415 aa PF00493 MCM 443-531 aa PF17855 MCM_lid 552-633 aa

XP_057804035.1

674 aa

337

674

MCM9_N

MCM_OB

MCM

AAA_5

AAA

Mg_chelatase

MCM_lid

PF26066 MCM9_N 9-99 aa PF17207 MCM_OB 117-259 aa PF00493 MCM 318-521 aa PF07728 AAA_5 361-475 aa PF00004 AAA 362-479 aa PF01078 Mg_chelatase 407-503 aa PF17855 MCM_lid 542-623 aa

XP_057804036.1

657 aa

328

657

MCM9_N

MCM_OB

MCM

AAA_5

AAA

Mg_chelatase

MCM_lid

PF26066 MCM9_N 9-99 aa PF17207 MCM_OB 117-242 aa PF00493 MCM 301-504 aa PF07728 AAA_5 344-458 aa PF00004 AAA 345-462 aa PF01078 Mg_chelatase 390-486 aa PF17855 MCM_lid 525-606 aa

XP_057804037.1

657 aa

328

657

MCM9_N

MCM_OB

MCM

AAA_5

AAA

Mg_chelatase

MCM_lid

PF26066 MCM9_N 9-99 aa PF17207 MCM_OB 117-242 aa PF00493 MCM 301-504 aa PF07728 AAA_5 344-458 aa PF00004 AAA 345-462 aa PF01078 Mg_chelatase 390-486 aa PF17855 MCM_lid 525-606 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804030.1`	Pfam	`PF26066`	MCM9_N	Domain	9	99	1.2e-15	58.1	MCM9, N-terminal domain
`XP_057804030.1`	Pfam	`PF17207`	MCM_OB	Domain	117	259	8.5e-26	90.9	MCM OB domain
`XP_057804030.1`	Pfam	`PF00493`	MCM	Domain	318	432	2.6e-67	227.0	MCM P-loop domain
`XP_057804030.1`	Pfam	`PF00493`	MCM	Domain	460	548	2.6e-67	227.0	MCM P-loop domain
`XP_057804030.1`	Pfam	`PF17855`	MCM_lid	Domain	569	650	3.4e-19	69.8	MCM AAA-lid domain
`XP_057804031.1`	Pfam	`PF26066`	MCM9_N	Domain	9	99	1.2e-15	58.1	MCM9, N-terminal domain
`XP_057804031.1`	Pfam	`PF17207`	MCM_OB	Domain	117	259	8.5e-26	90.9	MCM OB domain
`XP_057804031.1`	Pfam	`PF00493`	MCM	Domain	318	432	2.6e-67	227.0	MCM P-loop domain
`XP_057804031.1`	Pfam	`PF00493`	MCM	Domain	460	548	2.6e-67	227.0	MCM P-loop domain
`XP_057804031.1`	Pfam	`PF17855`	MCM_lid	Domain	569	650	3.4e-19	69.8	MCM AAA-lid domain
`XP_057804032.1`	Pfam	`PF26066`	MCM9_N	Domain	9	99	1.2e-15	58.1	MCM9, N-terminal domain
`XP_057804032.1`	Pfam	`PF17207`	MCM_OB	Domain	117	259	8.5e-26	90.9	MCM OB domain
`XP_057804032.1`	Pfam	`PF00493`	MCM	Domain	318	432	2.6e-67	227.0	MCM P-loop domain
`XP_057804032.1`	Pfam	`PF00493`	MCM	Domain	460	548	2.6e-67	227.0	MCM P-loop domain
`XP_057804032.1`	Pfam	`PF17855`	MCM_lid	Domain	569	650	3.4e-19	69.8	MCM AAA-lid domain
`XP_057804033.1`	Pfam	`PF26066`	MCM9_N	Domain	9	99	1.2e-15	58.1	MCM9, N-terminal domain
`XP_057804033.1`	Pfam	`PF17207`	MCM_OB	Domain	117	259	8.5e-26	90.9	MCM OB domain
`XP_057804033.1`	Pfam	`PF00493`	MCM	Domain	318	432	2.6e-67	227.0	MCM P-loop domain
`XP_057804033.1`	Pfam	`PF00493`	MCM	Domain	460	548	2.6e-67	227.0	MCM P-loop domain
`XP_057804033.1`	Pfam	`PF17855`	MCM_lid	Domain	569	650	3.4e-19	69.8	MCM AAA-lid domain
`XP_057804034.1`	Pfam	`PF26066`	MCM9_N	Domain	9	99	1.1e-15	58.2	MCM9, N-terminal domain
`XP_057804034.1`	Pfam	`PF17207`	MCM_OB	Domain	117	242	9.1e-28	97.3	MCM OB domain
`XP_057804034.1`	Pfam	`PF00493`	MCM	Domain	301	415	2.4e-67	227.0	MCM P-loop domain
`XP_057804034.1`	Pfam	`PF00493`	MCM	Domain	443	531	2.4e-67	227.0	MCM P-loop domain
`XP_057804034.1`	Pfam	`PF17855`	MCM_lid	Domain	552	633	3.2e-19	69.9	MCM AAA-lid domain
`XP_057804035.1`	Pfam	`PF26066`	MCM9_N	Domain	9	99	1.1e-15	58.2	MCM9, N-terminal domain
`XP_057804035.1`	Pfam	`PF17207`	MCM_OB	Domain	117	259	7.9e-26	91.0	MCM OB domain
`XP_057804035.1`	Pfam	`PF00493`	MCM	Domain	318	521	1.6e-73	247.3	MCM P-loop domain
`XP_057804035.1`	Pfam	`PF07728`	AAA_5	Domain	361	475	1.7e-06	28.8	AAA domain (dynein-related subfamily)
`XP_057804035.1`	Pfam	`PF00004`	AAA	Domain	362	479	0.00015	23.0	ATPase family associated with various cellular activities (AAA)
`XP_057804035.1`	Pfam	`PF01078`	Mg_chelatase	Domain	407	503	1.8e-08	34.8	Magnesium chelatase, subunit ChlI
`XP_057804035.1`	Pfam	`PF17855`	MCM_lid	Domain	542	623	2.8e-19	70.1	MCM AAA-lid domain
`XP_057804036.1`	Pfam	`PF26066`	MCM9_N	Domain	9	99	1e-15	58.3	MCM9, N-terminal domain
`XP_057804036.1`	Pfam	`PF17207`	MCM_OB	Domain	117	242	8.5e-28	97.3	MCM OB domain
`XP_057804036.1`	Pfam	`PF00493`	MCM	Domain	301	504	1.5e-73	247.3	MCM P-loop domain
`XP_057804036.1`	Pfam	`PF07728`	AAA_5	Domain	344	458	1.6e-06	28.9	AAA domain (dynein-related subfamily)
`XP_057804036.1`	Pfam	`PF00004`	AAA	Domain	345	462	0.00014	23.0	ATPase family associated with various cellular activities (AAA)
`XP_057804036.1`	Pfam	`PF01078`	Mg_chelatase	Domain	390	486	1.7e-08	34.9	Magnesium chelatase, subunit ChlI
`XP_057804036.1`	Pfam	`PF17855`	MCM_lid	Domain	525	606	2.7e-19	70.2	MCM AAA-lid domain
`XP_057804037.1`	Pfam	`PF26066`	MCM9_N	Domain	9	99	1e-15	58.3	MCM9, N-terminal domain
`XP_057804037.1`	Pfam	`PF17207`	MCM_OB	Domain	117	242	8.5e-28	97.3	MCM OB domain
`XP_057804037.1`	Pfam	`PF00493`	MCM	Domain	301	504	1.5e-73	247.3	MCM P-loop domain
`XP_057804037.1`	Pfam	`PF07728`	AAA_5	Domain	344	458	1.6e-06	28.9	AAA domain (dynein-related subfamily)
`XP_057804037.1`	Pfam	`PF00004`	AAA	Domain	345	462	0.00014	23.0	ATPase family associated with various cellular activities (AAA)
`XP_057804037.1`	Pfam	`PF01078`	Mg_chelatase	Domain	390	486	1.7e-08	34.9	Magnesium chelatase, subunit ChlI
`XP_057804037.1`	Pfam	`PF17855`	MCM_lid	Domain	525	606	2.7e-19	70.2	MCM AAA-lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057948050.1
TTCAAGGAAAACATCATGTTAAATAGAGATTCTCCACTTATAACCCATTGAAAAAAGGGAAAAGACATTCTTAGGGTTCCAAACAACATAACATTTTGTAGAATTTGGACTCGCTAGTCGTCAATGGGATCAAATTCGCGAATTAAAGTGACAGTCACAGACTCACAGAGGTGGTGGTAATGGAGAAGGAGAGAGGGCGCGACAAAGAAATGGCGGCATTTCTGATTAAACATCACTTGGAACAACTCCGAAGTATTATC...

XM_057948049.1
ATTTTCAAAAAAATAAATTAACCTTTCCGCCAAACTCTCTGCGTCTCTCGCACAGTGACAGTCACAGACTCACAGAGGTGGTGGTAATGGAGAAGGAGAGAGGGCGCGACAAAGAAATGGCGGCATTTCTGATTAAACATCACTTGGAACAACTCCGAAGTATTATCCTCTCTTCCGATCCTCGCCTTCACTATCCTCTCCACGTTGATTTTGCTGAGTTAATGGAAGACAATCCACCATTGGCACACCTCATTTTCGAA...

CDS

8 records

下载 CDS FASTA

LOC131019503
ATGGAGAAGGAGAGAGGGCGCGACAAAGAAATGGCGGCATTTCTGATTAAACATCACTTGGAACAACTCCGAAGTATTATCCTCTCTTCCGATCCTCGCCTTCACTATCCTCTCCACGTTGATTTTGCTGAGTTAATGGAAGACAATCCACCATTGGCACACCTCATTTTCGAACACCCTAAGGAATTTCTACCTCTCTTCGATGATTCTGCTGTCTGGGCTCAGAAAGTCATCTTTGAGGATTTTAAGAGAATGGAGAA...

Protein

8 records

下载 Protein FASTA

XP_057804030.1
MEKERGRDKEMAAFLIKHHLEQLRSIILSSDPRLHYPLHVDFAELMEDNPPLAHLIFEHPKEFLPLFDDSAVWAQKVIFEDFKRMENASIKAYVHVRINFSGSPLEYPETFPSIGRVRVKHRGILLTLKGTVIRTSAIKMIEGEKIYECRVCKHRDLKLRTSLLLCIHGLQQFKVYPEVETRNSTTRPTFCPSQNCESTRFQIIEERSICHDYQEIKIQESTQVLGVGAIPRSIPVIMKDDLVDIVKAGDDVIVTGVLTA...

XP_057804031.1
MEKERGRDKEMAAFLIKHHLEQLRSIILSSDPRLHYPLHVDFAELMEDNPPLAHLIFEHPKEFLPLFDDSAVWAQKVIFEDFKRMENASIKAYVHVRINFSGSPLEYPETFPSIGRVRVKHRGILLTLKGTVIRTSAIKMIEGEKIYECRVCKHRDLKLRTSLLLCIHGLQQFKVYPEVETRNSTTRPTFCPSQNCESTRFQIIEERSICHDYQEIKIQESTQVLGVGAIPRSIPVIMKDDLVDIVKAGDDVIVTGVLTA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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